PDB entry 5jvj

View 5jvj on RCSB PDB site
Description: C4-type pyruvate phosphate dikinase: different conformational states of the nucleotide binding domain in the dimer
Class: transferase
Keywords: phosphotransferase, nucleotide binding, conformational transition, swiveling mechanism, transferase
Deposited on 2016-05-11, released 2017-04-05
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-04-05, with a file datestamp of 2017-03-31.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5jvja1, d5jvja2, d5jvja3
  • Chain 'B':
    Compound: Pyruvate, phosphate dikinase, chloroplastic
    Species: Flaveria trinervia [TaxId:4227]
    Gene: PPDK, PDK
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5jvjb1, d5jvjb2, d5jvjb3
  • Heterogens: PEP, MG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5jvjA (A:)
    kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
    ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
    glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
    lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
    qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
    eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
    dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
    qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
    mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
    adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
    rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
    evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
    isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
    srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
    pssvaffdgvgldyvscspfrvpiarlaaaqviv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5jvjA (A:)
    kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
    ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismdtvlnlglndevvaglag
    ksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaedtdltaadlkdlvekyknvy
    veakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavniqsmvfgnmg
    ntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmpeaykelven
    ceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvneglidtrtaikrv
    etqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwhaqgksailvr
    tetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvnddmkiftigdr
    vikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvmanadtpndalt
    arnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyqrsdfegifr
    amdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienlsevnpmlgfr
    gcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaa
    nvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkfl
    qiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehggepssvaffdg
    vgldyvscspfrvpiarlaaaqviv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5jvjB (B:)
    kkrvftfgkgrsegnrdmksllggkganlaemssiglsvppgltisteaceeyqqngksl
    ppglwdeisegldyvqkemsaslgdpskplllsvrsgaaismpgmmdtvlnlglndevva
    glagksgarfaydsyrrfldmfgnvvmgiphslfdekleqmkaekgihldtdltaadlkd
    lvekyknvyveakgekfptdpkkqlelavnavfdswdsprankyrsinqitglkgtavni
    qsmvfgnmgntsgtgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmp
    eaykelvenceilerhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvnegli
    dtrtaikrvetqhldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwha
    qgksailvrtetspedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvndd
    mkiftigdrvikegdwlslngttgevilgkqllappamsndleifmswadqarrlkvman
    adtpndaltarnngaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyq
    rsdfegiframdglpvtirlldpplheflpegdlehivnelavdtgmsadeiyskienls
    evnpmlgfrgcrlgisypeltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhq
    isvirgvaanvfaemgvtleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgy
    srddvgkflqiylaqgilqhdpfevidqkgvgqlikmatekgraanpslkvgicgehgge
    pssvaffdgvgldyvscspfrvpiarlaaaqviv
    

    Sequence, based on observed residues (ATOM records): (download)
    >5jvjB (B:)
    krvftfgkgrsegnrdggkganlaemssiglsvppgltisdeisegldyvqkemsaskpl
    llsvrsgaaidtvlnlglndevvksgarfaydsyrrfldmfgnvvmgiphslfdekleqm
    kihldtdltaadlkdlvekyknvyvetdpkkqlelavnavfdsavniqsmvfgnmgntsg
    tgvlftrnpstgekklygeflinaqgedvvagirtpedlgtmetcmpeaykelvenceil
    erhykdmmdieftvqenrlwmlqcrtgkrtgkgavriavdmvneglidtrtaikrvetqh
    ldqllhpqfedpsaykshvvatglpaspgaavgqvcfsaedaetwhaqgksailvrtets
    pedvggmhaaagiltarggmtshaavvargwgkccvsgcadirvnddmkiftigdrvike
    gdwlslngttgevilgkqllappamsndleifmswadqarrlkvmanadtpndaltarnn
    gaqgiglcrtehmffasderikavrkmimavtpeqrkvaldlllpyqrsdfegiframdg
    lpvtirlldpplheflpdlehivnelavdmsadeiyskienlsevnpmlgfrgcrlgisy
    peltemqvraifqaavsmtnqgvtvipeimvplvgtpqelrhqisvirgvaanvfaemgv
    tleykvgtmieipraaliaeeigkeadffsfgtndltqmtfgysrddvgkflqiylaqgi
    lqhdpfevidqkgvgqlikmatekgraanpslkvgicgehggepssvaffdgvgldyvsc
    spfrvpiarlaaaqviv