PDB entry 5joy

View 5joy on RCSB PDB site
Description: Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG
Class: hydrolase
Keywords: Glycoside hydrolase, GH43, hydrolase
Deposited on 2016-05-03, released 2016-08-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Non-reducing end alpha-L-arabinofuranosidase BoGH43A
    Species: BACTEROIDES OVATUS [TaxId:28116]
    Gene: BACOVA_02654
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7LXT8 (10-End)
      • expression tag (9)
    Domains in SCOPe 2.07: d5joya1, d5joya2, d5joya3
  • Chain 'B':
    Compound: Non-reducing end alpha-L-arabinofuranosidase BoGH43A
    Species: BACTEROIDES OVATUS [TaxId:28116]
    Gene: BACOVA_02654
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5joyb1, d5joyb2
  • Heterogens: TRS, 6LW, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5joyA (A:)
mgsshhhhhhqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweq
igncltrpsqldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewse
pvwleqggidpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaeg
phiykkdgwyylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqg
tghadlvegtdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkm
dvptlpqqemkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwk
sptfvalrqehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglr
yklgeithyakevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetagg
ftgvvlglyitsaskdskayadfeyfkykgkpgenk

    Sequence, based on observed residues (ATOM records): (download) 
    >5joyA (A:)
hqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweqigncltrps
qldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewsepvwleqggi
dpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaegphiykkdgw
yylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqgtghadlveg
tdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkmdvptlpqqe
mkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwksptfvalrq
ehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglryklgeithy
akevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetaggftgvvlgly
itsaskdskayadfeyfkykgk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5joyB (B:)
mgsshhhhhhqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweq
igncltrpsqldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewse
pvwleqggidpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaeg
phiykkdgwyylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqg
tghadlvegtdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkm
dvptlpqqemkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwk
sptfvalrqehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglr
yklgeithyakevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetagg
ftgvvlglyitsaskdskayadfeyfkykgkpgenk

    Sequence, based on observed residues (ATOM records): (download) 
    >5joyB (B:)
qgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweqigncltrpsq
ldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewsepvwleqggid
pslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaegphiykkdgwy
ylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqgtghadlvegt
dgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkmdvptlpqqem
kgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwksptfvalrqe
hfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglryklgeithya
kevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetaggftgvvlglyi
tsaskdskayadfeyfkykgkp