PDB entry 5joy

View 5joy on RCSB PDB site
Description: Bacteroides ovatus Xyloglucan PUL GH43A in complex with AraLOG
Class: hydrolase
Keywords: Glycoside hydrolase, GH43, hydrolase
Deposited on 2016-05-03, released 2016-08-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-08-10, with a file datestamp of 2016-08-05.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Non-reducing end alpha-L-arabinofuranosidase BoGH43A
    Species: BACTEROIDES OVATUS [TaxId:28116]
    Gene: BACOVA_02654
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7LXT8 (10-End)
      • expression tag (9)
    Domains in SCOPe 2.06: d5joya1, d5joya2, d5joya3
  • Chain 'B':
    Compound: Non-reducing end alpha-L-arabinofuranosidase BoGH43A
    Species: BACTEROIDES OVATUS [TaxId:28116]
    Gene: BACOVA_02654
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5joyb1, d5joyb2
  • Heterogens: TRS, 6LW, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5joyA (A:)
    mgsshhhhhhqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweq
    igncltrpsqldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewse
    pvwleqggidpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaeg
    phiykkdgwyylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqg
    tghadlvegtdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkm
    dvptlpqqemkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwk
    sptfvalrqehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglr
    yklgeithyakevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetagg
    ftgvvlglyitsaskdskayadfeyfkykgkpgenk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5joyA (A:)
    hqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweqigncltrps
    qldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewsepvwleqggi
    dpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaegphiykkdgw
    yylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqgtghadlveg
    tdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkmdvptlpqqe
    mkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwksptfvalrq
    ehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglryklgeithy
    akevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetaggftgvvlgly
    itsaskdskayadfeyfkykgk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5joyB (B:)
    mgsshhhhhhqgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweq
    igncltrpsqldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewse
    pvwleqggidpslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaeg
    phiykkdgwyylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqg
    tghadlvegtdgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkm
    dvptlpqqemkgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwk
    sptfvalrqehfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglr
    yklgeithyakevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetagg
    ftgvvlglyitsaskdskayadfeyfkykgkpgenk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5joyB (B:)
    qgysnpvipgfhpdpsvckagddyylvnssfqyfpgvplfhskdlvhweqigncltrpsq
    ldltnansgsgifaptiryndgvfymittnvsgkgnflvhttdprsewsepvwleqggid
    pslyfedgkcfmvsnpdgyinlceidpmtgkqlssskriwngtggryaegphiykkdgwy
    ylliseggtelghkvtiarsryidgpyqgnpanpilthanesgqsspiqgtghadlvegt
    dgswwmvclayrimpgthhtlgretylapvrwdkdawpvvnsngtislkmdvptlpqqem
    kgrperidfkegklspewihlqnpeaknyiftkdgklrliatpvtlsdwksptfvalrqe
    hfdmeasapvvlqkagvndeagisvfmefhshydlfvrqdkdrkrsvglryklgeithya
    kevslptdgevelvvksdinyyyfgykvngiyhdlgkmntrylstetaggftgvvlglyi
    tsaskdskayadfeyfkykgkp