SCOPe 2.08: Structural Classification of Proteins

PDB entry 5jkm

View 5jkm on RCSB PDB site
Description: Binary crystal structure of positively and negatively supercharged variants Ftn(pos) and Ftn(neg) from human heavy chain ferritin (Mg acetate condition)
Class: oxidoreductase
Keywords: protein design, protein engineering, charged protein containers, binary protein structures, self-assembly, binary nanoparticle superlattices, Oxidoreductase
Deposited on 2016-04-26, released 2016-10-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-10-26, with a file datestamp of 2016-10-21.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkma_
Chain 'B':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkmb_
Chain 'C':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkmc_
Chain 'D':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkmd_
Chain 'E':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkme_
Chain 'F':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (25)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (98)
  - engineered mutation (102)
  - engineered mutation (105)
  - engineered mutation (109)
  - engineered mutation (123)
  - engineered mutation (162)
Domains in SCOPe 2.08: d5jkmf_
Chain 'G':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkmg_
Chain 'H':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkmh_
Chain 'I':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkmi_
Chain 'J':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkmj_
Chain 'K':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkmk_
Chain 'L':
Compound: ferritin heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15
Database cross-references and differences (RAF-indexed):
- Uniprot P02794
  - engineered mutation (18)
  - engineered mutation (86)
  - engineered mutation (90)
  - engineered mutation (102)
  - engineered mutation (105)
Domains in SCOPe 2.08: d5jkml_
Heterogens: FE, MG, GOL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5jkmA (A:)
mttastsqvrqnyhqdsekainrqirlelyasyvylsmsyyfdrddvalknfakyflhqs
heerehaeklmklqnqrggriflqdiqkpdkddwesglramekalklekkvnqsllelhk
latkkndphlcdfiethylneqvkaikelgdhvtnlrkmgaprsglaeylfdkhtlgdsd
nes