PDB entry 5jhl

View 5jhl on RCSB PDB site
Description: Crystal structure of zika virus envelope protein in complex with a flavivirus broadly-protective antibody
Class: viral protein/immune system
Keywords: zika virus, envelope protein, flavivirus, broadly-protective antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2016-04-21, released 2016-05-11
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-08-10, with a file datestamp of 2016-08-05.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope protein
    Species: Zika virus [TaxId:64320]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JHL
    Domains in SCOPe 2.07: d5jhla1, d5jhla2
  • Chain 'H':
    Compound: antibody heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JHL
  • Chain 'L':
    Compound: Antibody Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JHL
    Domains in SCOPe 2.07: d5jhll1, d5jhll2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jhlA (A:)
mircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsy
cyeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakf
acskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeat
lggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnk
ealvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklr
lkgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrli
tanpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5jhlA (A:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhnrakveitpnspraeatlggfgslgldceprtgldf
sdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnkealvefkdahakrqtvvvl
gsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrlkgvsyslctaaftftkip
aetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlitanpvitestenskmmlel
dppfgdsyivigvgekkithhwhrs

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5jhlL (L:)
efdivmtqsqkfmstsvgdrvsitckasqhvgsavawyqqkpgqsptllihsasnrytgv
pdrftgsgsgtdftltisniqsedladyfcqqynsyptfgggtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrnecs

    Sequence, based on observed residues (ATOM records): (download) 
    >5jhlL (L:)
fdivmtqsqkfmstsvgdrvsitckasqhvgsavawyqqkpgqsptllihsasnrytgvp
drftgsgsgtdftltisniqsedladyfcqqynsyptfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnr