PDB entry 5jf7

View 5jf7 on RCSB PDB site
Description: Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor SMP289
Class: hydrolase
Keywords: PDF, type 2, NME, N-terminal methionine excision, Streptococcus agalactiae, inhibitor, SMP289, Hydrolase
Deposited on 2016-04-19, released 2016-11-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: STREPTOCOCCUS AGALACTIAE [TaxId:1311]
    Gene: def, gbs1883
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8E378 (Start-203)
      • engineered mutation (1)
    Domains in SCOPe 2.08: d5jf7a_
  • Heterogens: 6JU, ACT, IMD, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jf7A (A:)
maaidklvkashlidmndiiregnptlrkvaeevtfplsekeeilgekmmqflkhsqdpi
maeklglrggvglaapqldiskriiavlvpnvedaqgnppkeayslqevmynpkvvshsv
qdaalsdgegclsvdrevpgyvvrharvtieyfdktgekhrlklkgynsivvqheidhid
gimfydrineknpfavkegllile

    Sequence, based on observed residues (ATOM records): (download) 
    >5jf7A (A:)
aaidklvkashlidmndiiregnptlrkvaeevtfplsekeeilgekmmqflkhsqdpim
aeklglrggvglaapqldiskriiavlvpnvedaqgnppkeayslqevmynpkvvshsvq
daalsdgegclsvdrevpgyvvrharvtieyfdktgekhrlklkgynsivvqheidhidg
imfydrineknpfavkegllile