PDB entry 5jd2
View 5jd2 on RCSB PDB site
Description: SFX structure of corestreptavidin-selenobiotin complex
Class: Biotin binding protein
Keywords: SAD, SFX, FEL, streptavidin, Biotin binding protein
Deposited on
2016-04-15, released
2016-11-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-04, with a file datestamp of
2019-11-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: streptavidin
Species: Streptomyces avidinii [TaxId:1895]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5jd2a_ - Chain 'B':
Compound: streptavidin
Species: Streptomyces avidinii [TaxId:1895]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5jd2b_ - Chain 'C':
Compound: streptavidin
Species: Streptomyces avidinii [TaxId:1895]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5jd2c_ - Chain 'D':
Compound: streptavidin
Species: Streptomyces avidinii [TaxId:1895]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5jd2d_ - Heterogens: BYY, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5jd2A (A:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvkp
Sequence, based on observed residues (ATOM records): (download)
>5jd2A (A:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5jd2B (B:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvkp
Sequence, based on observed residues (ATOM records): (download)
>5jd2B (B:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvk
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5jd2C (C:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvkp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5jd2D (D:)
gitgtwynqlgstfivtagadgaltgtyesavgnaesryvltgrydsapatdgsgtalgw
tvawknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvkp
Sequence, based on observed residues (ATOM records): (download)
>5jd2D (D:)
gitgtwynqlgstfivtagadgaltgtyesavesryvltgrydsapatdgsgtalgwtva
wknnyrnahsattwsgqyvggaearintqwlltsgtteanawkstlvghdtftkvk