PDB entry 5j5y

View 5j5y on RCSB PDB site
Description: Translation initiation factor 4E in complex with m2(7,2'O)GppCCl2ppG mRNA 5' cap analog
Class: translation
Keywords: Protein-ligand complex, translation initiation factor, eIF4E, m2(7, 2'O)GppCCl2ppG, dichloromethylenebisphosphonate, mRNA 5' cap analog, translation
Deposited on 2016-04-04, released 2017-05-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: eukaryotic translation initiation factor 4e
    Species: Mus musculus [TaxId:10090]
    Gene: eif4e
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j5ya_
  • Chain 'B':
    Compound: eukaryotic translation initiation factor 4e
    Species: Mus musculus [TaxId:10090]
    Gene: eif4e
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j5yb_
  • Chain 'C':
    Compound: eukaryotic translation initiation factor 4e
    Species: Mus musculus [TaxId:10090]
    Gene: eif4e
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j5yc_
  • Chain 'D':
    Compound: eukaryotic translation initiation factor 4e
    Species: Mus musculus [TaxId:10090]
    Gene: eif4e
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j5yd_
  • Heterogens: 6G6, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j5yA (A:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5j5yA (A:)
pehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgcd
yslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddvc
gavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtattknrf
vv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5j5yB (B:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5j5yB (B:)
pehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgcd
yslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddvc
gavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatknrfv
v

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5j5yC (C:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5j5yC (C:)
pehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmpgcd
yslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysddvc
gavvnvrakgdkiaiwttecvthigrvykerlglp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5j5yD (D:)
vanpehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmp
gcdyslfkdgiepmwedeknkrggrwlitlnkqqrrsdldrfwletllcligesfddysd
dvcgavvnvrakgdkiaiwttecenrdavthigrvykerlglppkivigyqshadtatks
gsttknrfvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5j5yD (D:)
pehyikhplqnrwalwffkndksktwqanlrliskfdtvedfwalynhiqlssnlmcdys
lfkdgiepmwedekngrwlitlnkqqrrsdldrfwletllcligesfddysdvcgavvnv
rakgdkiaiwttnrdavthigrvykerlglpyqshadtnrfv