PDB entry 5j5d

View 5j5d on RCSB PDB site
Description: Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with alpha-ketopimelic acid
Class: lyase
Keywords: Dap pathway, L-lysine, alpha-ketopimelic acid, LYASE
Deposited on 2016-04-02, released 2016-08-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Mycobacterium tuberculosis H37Rv [TaxId:83332]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j5da_
  • Heterogens: NA, 6GT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j5dA (A:)
mttvgfdvaarlgtlltamvtpfsgdgsldtataarlanhlvdqgcdglvvsgttgespt
ttdgekiellravleavgdrarviagagtydtahsirlakacaaegahgllvvtpyyskp
pqrglqahftavadatelpmllydipgrsavpiepdtiralashpnivgvkdakadlhsg
aqimadtglayysgddalnlpwlamgatgfisviahlaagqlrellsafgsgdiatarki
niavaplcnamsrlggvtlskaglrlqgidvgdprlpqvaatpeqidalaadmraasvlr

    Sequence, based on observed residues (ATOM records): (download) 
    >5j5dA (A:)
vgfdvaarlgtlltamvtpfsgdgsldtataarlanhlvdqgcdglvvsgttgesptttd
gekiellravleavgdrarviagagtydtahsirlakacaaegahgllvvtpyyskppqr
glqahftavadatelpmllydipgrsavpiepdtiralashpnivgvkdakadlhsgaqi
madtglayysgddalnlpwlamgatgfisviahlaagqlrellsafgsgdiatarkinia
vaplcnamsrlggvtlskaglrlqgidvgdprlpqvaatpeqidalaadmraasvlr