PDB entry 5j1x

View 5j1x on RCSB PDB site
Description: X-ray structure of neuropilin-1 b1 domain complexed with Arg-5 ligand.
Class: signaling protein
Keywords: SIGNALING PROTEIN, Neuropilin-1, Angiogenesis
Deposited on 2016-03-29, released 2017-04-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-29, with a file datestamp of 2017-11-24.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j1xa_
  • Chain 'B':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j1xb_
  • Chain 'C':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (3-157)
      • expression tag (2)
    Domains in SCOPe 2.07: d5j1xc1, d5j1xc2
  • Chain 'D':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5j1xd_
  • Heterogens: AR5, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5j1xA (A:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records): (download) 
    >5j1xA (A:)
fkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgl
lrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvv
avfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5j1xB (B:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records): (download) 
    >5j1xB (B:)
kcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgll
rfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvva
vfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5j1xC (C:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records): (download) 
    >5j1xC (C:)
mfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlg
llrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvv
vavfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5j1xD (D:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records): (download) 
    >5j1xD (D:)
fkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgl
lrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvv
avfpkplitrfvrikpatwetgismrfevygckit