PDB entry 5iyy
View 5iyy on RCSB PDB site
Description: X-ray structure of neuropilin-1 b1 domain complexed with Arg-4 ligand.
Class: signaling protein
Keywords: SIGNALING PROTEIN, Neuropilin-1, Angiogenesis
Deposited on
2016-03-24, released
2017-04-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-07-11, with a file datestamp of
2018-07-06.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Neuropilin-1
Species: Homo sapiens [TaxId:9606]
Gene: NRP1, NRP, VEGF165R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iyya1, d5iyya2 - Chain 'B':
Compound: Neuropilin-1
Species: Homo sapiens [TaxId:9606]
Gene: NRP1, NRP, VEGF165R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iyyb1, d5iyyb2 - Heterogens: R40, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5iyyA (A:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit
Sequence, based on observed residues (ATOM records): (download)
>5iyyA (A:)
mfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlg
llrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvv
vavfpkplitrfvrikpatwetgismrfevygckit
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5iyyB (B:)
ghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvd
lgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptd
vvvavfpkplitrfvrikpatwetgismrfevygckit
Sequence, based on observed residues (ATOM records): (download)
>5iyyB (B:)
hmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdl
gllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdv
vvavfpkplitrfvrikpatwetgismrfevygckit