PDB entry 5itp

View 5itp on RCSB PDB site
Description: Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine
Class: membrane protein
Keywords: Periplasmic binding protein, opine, membrane protein
Deposited on 2016-03-17, released 2016-11-30
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-11-30, with a file datestamp of 2016-11-25.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum [TaxId:358]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5itpa_
  • Chain 'B':
    Compound: Nopaline-binding periplasmic protein
    Species: Agrobacterium fabrum [TaxId:358]
    Gene: nocT, Atu6027, AGR_pTi_67
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5itpb_
  • Heterogens: 6DB, EDO, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5itpA (A:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamgiqparekviafsrpylltpmtflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5itpA (A:)
yksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsltag
rydaimaamgiqparekviafsrpylltpmtflttadspllktqvaienlpldnitpeqk
aeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridaslas
vsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgtv
qklsqqwfgydasp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5itpB (B:)
mkdyksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsl
tagrydaimaamgiqparekviafsrpylltpmtflttadspllktqvaienlpldnitp
eqkaeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridas
lasvsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiad
gtvqklsqqwfgydaspkqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5itpB (B:)
yksitiategsyapynfkdaggkligfdidlgndlckrmnieckfveqawdgiipsltag
rydaimaamgiqparekviafsrpylltpmtflttadspllktqvaienlpldnitpeqk
aeldkftkifegvkfgvqagtsheafmkqmmpsvqistydtidnvvmdlkagridaslas
vsflkpltdkpdnkdlkmfgprmtgglfgkgvgvgirkedadlkalfdkaidaaiadgtv
qklsqqwfgydasp