PDB entry 5iom

View 5iom on RCSB PDB site
Description: Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni is space group P6322
Class: transferase
Keywords: Nucleoside Diphosphate Kinase, enzyme, TRANSFERASE
Deposited on 2016-03-08, released 2017-08-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5ioma1, d5ioma2
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.08: d5iomb1, d5iomb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iomA (A:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5iomB (B:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iomB (B:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe