PDB entry 5iol

View 5iol on RCSB PDB site
Description: Crystal structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni
Class: transferase
Keywords: Nucleoside Diphosphate Kinase, enzyme, TRANSFERASE
Deposited on 2016-03-08, released 2017-03-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-03-08, with a file datestamp of 2017-03-03.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iola1, d5iola2
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iolb1, d5iolb2
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iolc1, d5iolc2
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5iold1, d5iold2
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iole1, d5iole2
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5iolf1, d5iolf2
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iolg1, d5iolg2
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5iolh1, d5iolh2
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5ioli1, d5ioli2
  • Chain 'J':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iolj1, d5iolj2
  • Chain 'K':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (1)
    Domains in SCOPe 2.07: d5iolk1, d5iolk2
  • Chain 'L':
    Compound: Nucleoside diphosphate kinase
    Species: Schistosoma mansoni [TaxId:6183]
    Gene: Smp_092750
    Database cross-references and differences (RAF-indexed):
    • Uniprot G4VJY9 (2-149)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5ioll1, d5ioll2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5iolA (A:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolA (A:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5iolB (B:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolB (B:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5iolC (C:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolC (C:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iolD (D:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5iolE (E:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolE (E:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iolF (F:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5iolG (G:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolG (G:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iolH (H:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5iolI (I:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolI (I:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5iolJ (J:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolJ (J:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5iolK (K:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe

    Sequence, based on observed residues (ATOM records): (download) 
    >5iolK (K:)
pertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffpk
lvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsdst
esanreinlwfspqelcqykqavdpwihe

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5iolL (L:)
gpertfimvkpdgvqrglvgeviqrferrgyklvaikmmhaseqllqthyealkslsffp
klvaymssgpvvpmvfegrkvvengrtmlgatkpeascpgsirgdycqdvgrnvvhgsds
tesanreinlwfspqelcqykqavdpwihe