PDB entry 5ikd

View 5ikd on RCSB PDB site
Description: Asymmetric sulfoxidation by engineering the heme pocket of a dye-decolorizing peroxidase
Class: oxidoreductase
Keywords: decolorizing peroxidase (dyp), f359g variant, oxidoreductase, heme
Deposited on 2016-03-03, released 2016-07-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 1.11 Å
R-factor: N/A
AEROSPACI score: 0.72 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dye-decolorizing peroxidase
    Species: Auricularia auricula-judae [TaxId:29892]
    Gene: dyp1
    Database cross-references and differences (RAF-indexed):
    • Uniprot I2DBY1 (0-445)
      • conflict (4)
      • engineered mutation (356)
    Domains in SCOPe 2.07: d5ikda_
  • Heterogens: HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ikdA (A:)
slntidiqgdilvgmhkqkqlfyffaindpatfkthlasdiapvvasvtqlsnvatqplv
alniafsntgllalgvtdnlgdslfangqakdatsfkestsswvpqfagtgihgviilas
dttdlidqqvasiestfgssisklyslsasirpgneaghemfgfldgiaqpaingfntpl
pgqnivdagviitgatndpitrpswavggsflafrqleqlvpefnkylldnapagsgslq
aradllgarmvgrwksgapidltptaddpalgadaqrnnnftyshagfdlgsdqshcpfs
ahirktrpradlggsltppnlsagansimrsgipygpevtsaesasntttqerglagvay
qaqlsqgfhflqqtwadnanfppgktpatvgldpiigqnngqprvvngllpsnssaslsi
pqfvvshggeyffsppisaiggrlsa