PDB entry 5ijr

View 5ijr on RCSB PDB site
Description: X-ray structure of neuropilin-1 b1 domain complexed with Arg-1 ligand.
Class: signaling protein
Keywords: SIGNALING PROTEIN, Neuropilin-1, Angiogenesis
Deposited on 2016-03-02, released 2017-03-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-03-29, with a file datestamp of 2017-03-24.
Experiment type: XRAY
Resolution: 1.52 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ijra_
  • Chain 'B':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (1-155)
      • cloning artifact (0)
    Domains in SCOPe 2.07: d5ijrb1, d5ijrb2
  • Heterogens: HRG, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ijrA (A:)
mfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlg
llrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvv
vavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records): (download) 
    >5ijrA (A:)
kcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgll
rfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvva
vfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5ijrB (B:)
mfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlg
llrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvv
vavfpkplitrfvrikpatwetgismrfevygckit