PDB entry 5iia
View 5iia on RCSB PDB site
Description: Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.7 A resolution (crystal form I)
Class: cell adhesion
Keywords: cell adhesion, fertilization, egg-sperm interaction, gamete recognition, sperm receptor, egg coat, vitelline envelope, zp domain, zp-n domain, sperm acrosome, egg coat penetration
Deposited on
2016-03-01, released
2017-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-06-29.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Egg-lysin
Species: Haliotis rufescens [TaxId:6454]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iiaa_ - Chain 'B':
Compound: Vitelline envelope sperm lysin receptor
Species: Haliotis rufescens [TaxId:6454]
Gene: VERL
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Egg-lysin
Species: Haliotis rufescens [TaxId:6454]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iiac_ - Chain 'D':
Compound: Vitelline envelope sperm lysin receptor
Species: Haliotis rufescens [TaxId:6454]
Gene: VERL
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Egg-lysin
Species: Haliotis rufescens [TaxId:6454]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iiae_ - Chain 'F':
Compound: Vitelline envelope sperm lysin receptor
Species: Haliotis rufescens [TaxId:6454]
Gene: VERL
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Egg-lysin
Species: Haliotis rufescens [TaxId:6454]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5iiag_ - Chain 'H':
Compound: Vitelline envelope sperm lysin receptor
Species: Haliotis rufescens [TaxId:6454]
Gene: VERL
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5iiaA (A:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk
Sequence, based on observed residues (ATOM records): (download)
>5iiaA (A:)
flnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanymlwi
nkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpadv
pvkym
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5iiaC (C:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk
Sequence, based on observed residues (ATOM records): (download)
>5iiaC (C:)
flnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanymlwi
nkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpadv
pvkym
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5iiaE (E:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk
Sequence, based on observed residues (ATOM records): (download)
>5iiaE (E:)
flnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanymlwi
nkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpadv
pvkym
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>5iiaG (G:)
rswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqt
hwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymee
inrmrpadvpvkymgk
Sequence, based on observed residues (ATOM records): (download)
>5iiaG (G:)
kflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwanymlw
inkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrmrpad
vpvkym
- Chain 'H':
No sequence available.