PDB entry 5ii9

View 5ii9 on RCSB PDB site
Description: Monoclinic crystal structure of red abalone lysin at 2.11 A resolution
Class: cell adhesion
Keywords: cell adhesion, fertilization, egg-sperm interaction, gamete recognition, egg-binding protein, acrosomal protein, egg coat penetration
Deposited on 2016-03-01, released 2017-06-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9a_
  • Chain 'B':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9b_
  • Chain 'C':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9c_
  • Chain 'D':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9d_
  • Chain 'E':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9e_
  • Chain 'F':
    Compound: Egg-lysin
    Species: Haliotis rufescens [TaxId:6454]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ii9f_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ii9A (A:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9A (A:)
hyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwa
nymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinr
mrpadvpvkym

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ii9B (B:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9B (B:)
hyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwa
nymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinr
mrpadvpvkym

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ii9C (C:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9C (C:)
yvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwan
ymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrm
rpadvpvkym

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ii9D (D:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9D (D:)
yvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwan
ymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinrm
rpadvpvkym

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ii9E (E:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9E (E:)
hyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwa
nymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinr
mrpadvpvkym

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ii9F (F:)
mgrswhyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrym
qthwanymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpym
eeinrmrpadvpvkymgk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ii9F (F:)
hyvepkflnkafevalkvqiiagfdrglvkwlrvhgrtlstvqkkalyfvnrrymqthwa
nymlwinkkidalgrtpvvgdytrlgaeigrridmayfydflkdknmipkylpymeeinr
mrpadvpvkym