PDB entry 5ids

View 5ids on RCSB PDB site
Description: Crystal Structure of a Glucose-1-phosphate Thymidylyltransferase from Burkholderia vietnamiensis
Class: transferase
Keywords: SSGCID, Glucose-1-phosphate thymidylyltransferase, Burkholderia vietnamiensis, Nucleotidyltransferase, Transferase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2016-02-24, released 2016-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Burkholderia vietnamiensis (strain G4 / LMG 22486) [TaxId:269482]
    Gene: Bcep1808_3215
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5idsa_
  • Chain 'B':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Burkholderia vietnamiensis (strain G4 / LMG 22486) [TaxId:269482]
    Gene: Bcep1808_3215
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5idsb_
  • Chain 'C':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Burkholderia vietnamiensis (strain G4 / LMG 22486) [TaxId:269482]
    Gene: Bcep1808_3215
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5idsc_
  • Chain 'D':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Burkholderia vietnamiensis (strain G4 / LMG 22486) [TaxId:269482]
    Gene: Bcep1808_3215
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5idsd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5idsA (A:)
mahhhhhhmtqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdv
lvistpqdtprfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdn
iyyghdfqpllkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnya
vtglyfydqqvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthds
lldasqfiatlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilket
vf

    Sequence, based on observed residues (ATOM records): (download) 
    >5idsA (A:)
tqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdvlvistpqdt
prfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdniyyghdfqp
llkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnyavtglyfydq
qvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthdslldasqfia
tlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5idsB (B:)
mahhhhhhmtqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdv
lvistpqdtprfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdn
iyyghdfqpllkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnya
vtglyfydqqvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthds
lldasqfiatlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilket
vf

    Sequence, based on observed residues (ATOM records): (download) 
    >5idsB (B:)
qrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdvlvistpqdtp
rfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdniyyghdfqpl
lkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnyavtglyfydqq
vvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthdslldasqfiat
lenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5idsC (C:)
mahhhhhhmtqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdv
lvistpqdtprfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdn
iyyghdfqpllkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnya
vtglyfydqqvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthds
lldasqfiatlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilket
vf

    Sequence, based on observed residues (ATOM records): (download) 
    >5idsC (C:)
tqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdvlvistpqdt
prfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdniyyghdfqp
llkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnyavtglyfydq
qvvdiakavkpseleitsvnqaymqqgqlnvqtmgrgyawldtgthdslldasqfiatle
nrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5idsD (D:)
mahhhhhhmtqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdv
lvistpqdtprfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdn
iyyghdfqpllkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnya
vtglyfydqqvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthds
lldasqfiatlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilket
vf

    Sequence, based on observed residues (ATOM records): (download) 
    >5idsD (D:)
tqrkgiilaggsgtrlhpatlaiskqllpvydkpmiyyplstlmlagmrdvlvistpqdt
prfqqllgdgsqwgmnlqyavqpspdglaqafiigeqfignapsalvlgdniyyghdfqp
llkaadaqssgatvfayhvhdperygvvqfnaqgqavsieekpkapksnyavtglyfydq
qvvdiakavkpsargeleitsvnqaymqqgqlnvqtmgrgyawldtgthdslldasqfia
tlenrqglkvacpeeiawrsgwinasqlealvqpltkngygqylmqilk