PDB entry 5i2m

View 5i2m on RCSB PDB site
Description: crystal structure of vsv-indiana (mudd-summers strain) glycoprotein under its acidic conformation
Class: membrane protein
Keywords: membrane, lipoprotein, glycoprotein, transmembrane, envelope protein, membrane protein
Deposited on 2016-02-09, released 2016-02-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-02-24, with a file datestamp of 2016-02-19.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein G
    Species: Vesicular stomatitis Indiana virus (strain Mudd-Summers) [TaxId:11279]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C2X0 (0-End)
      • conflict (40)
      • conflict (79)
    Domains in SCOPe 2.07: d5i2ma_
  • Chain 'B':
    Compound: Glycoprotein G
    Species: Vesicular stomatitis Indiana virus (strain Mudd-Summers) [TaxId:11279]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C2X0 (0-End)
      • conflict (40)
      • conflict (79)
    Domains in SCOPe 2.07: d5i2mb_
  • Chain 'C':
    Compound: Glycoprotein G
    Species: Vesicular stomatitis Indiana virus (strain Mudd-Summers) [TaxId:11279]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C2X0 (0-End)
      • conflict (40)
      • conflict (79)
    Domains in SCOPe 2.07: d5i2mc_
  • Heterogens: PE4, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5i2mA (A:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqdaasqlpdd
    es
    

    Sequence, based on observed residues (ATOM records): (download)
    >5i2mA (A:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehph
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5i2mB (B:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqdaasqlpdd
    es
    

    Sequence, based on observed residues (ATOM records): (download)
    >5i2mB (B:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5i2mC (C:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqdaasqlpdd
    es
    

    Sequence, based on observed residues (ATOM records): (download)
    >5i2mC (C:)
    kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
    askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
    daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
    lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
    dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
    dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
    apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehp