PDB entry 5hza

View 5hza on RCSB PDB site
Description: Crystal structure of GII.10 P domain in complex with 3-fucosyllactose (3 FL)
Class: viral protein
Keywords: Norovirus, P domain, HMO, 3-fucosyllactose, human milk, Virus, VIRAL PROTEIN
Deposited on 2016-02-02, released 2016-03-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: N/A
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norovirus GII.10 [TaxId:747305]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5hzaa_
  • Chain 'B':
    Compound: capsid protein
    Species: Norovirus GII.10 [TaxId:747305]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5hzab_
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5hzaA (A:)
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
rfdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >5hzaA (A:)
kpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgic
afrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntn
tvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvda
nshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqe
wvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfr
fdswvnqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5hzaB (B:)
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
rfdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >5hzaB (B:)
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
lpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfdqw
tlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhlyq
esapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswvnq
fytlapm