PDB entry 5hmg

View 5hmg on RCSB PDB site
Description: refinement of the influenza virus hemagglutinin by simulated annealing
Class: Viral Protein
Keywords: INFLUENZA VIRUS HEMAGGLUTININ, Viral Protein
Deposited on 1989-09-11, released 1991-01-15
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.22
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d5hmga_
  • Chain 'B':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03437 (0-174)
      • conflict (111)
    Domains in SCOPe 2.03: d5hmgb_
  • Chain 'C':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d5hmgc_
  • Chain 'D':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03437 (0-174)
      • conflict (111)
    Domains in SCOPe 2.03: d5hmgd_
  • Chain 'E':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d5hmge_
  • Chain 'F':
    Compound: hemagglutinin, ha1 chain
    Species: Influenza A virus [TaxId:387139]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03437 (0-174)
      • conflict (111)
    Domains in SCOPe 2.03: d5hmgf_
  • Heterogens: SIA, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgA (A:)
    qdlpgndnstatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrild
    gidctlidallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlef
    itegftwtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiw
    gihhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpg
    dvlvinsngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnki
    tygacpkyvkqntlklatgmrnvpekqt
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgB (B:)
    glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
    ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltgsemnklfe
    ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqikg
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgC (C:)
    qdlpgndnstatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrild
    gidctlidallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlef
    itegftwtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiw
    gihhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpg
    dvlvinsngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnki
    tygacpkyvkqntlklatgmrnvpekqt
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgD (D:)
    glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
    ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltgsemnklfe
    ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqikg
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgE (E:)
    qdlpgndnstatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrild
    gidctlidallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlef
    itegftwtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiw
    gihhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpg
    dvlvinsngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnki
    tygacpkyvkqntlklatgmrnvpekqt
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5hmgF (F:)
    glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
    ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltgsemnklfe
    ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqikg