PDB entry 5h56
View 5h56 on RCSB PDB site
Description: ADP and dTDP bound Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
Class: transferase
Keywords: Kinase, Transferase, Rossmann Fold, Product-bound
Deposited on
2016-11-04, released
2017-06-28
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-08-30, with a file datestamp of
2017-08-25.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: thymidylate kinase
Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
Gene: tmk, aq_969
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5h56a_ - Chain 'B':
Compound: thymidylate kinase
Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
Gene: tmk, aq_969
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5h56b_ - Heterogens: ADP, TYD, MG, CA, MPD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5h56A (A:)
mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
vfkeilralsgvlrv
Sequence, based on observed residues (ATOM records): (download)
>5h56A (A:)
mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
vfkeilralsgvlr
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5h56B (B:)
mliafegidgsgkttqakklyeylkqkgyfvslyrepggtkvgevlreillteelderte
lllfeasrsklieekiipdlkrdkvvildrfvlstiayqgygkgldvefiknlnefatrg
vkpditllldipvdialrrlkeknrfenkeflekvrkgflelakeeenvvvidasgeeee
vfkeilralsgvlrv