PDB entry 5gxq
View 5gxq on RCSB PDB site
Description: The crystal structure of the nucleosome containing H3.6
Class: structural protein/DNA
Keywords: Chromatin, Nucleosome, Histone variant, STRUCTURAL PROTEIN-DNA complex
Deposited on
2016-09-19, released
2017-04-19
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-18, with a file datestamp of
2017-10-13.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.16
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Histone H3.6
Species: Homo sapiens [TaxId:9606]
Gene: H3F3AP6
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: histone h4
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H4A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqb_ - Chain 'C':
Compound: Histone H2A type 1-B/E
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H2AB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqc_ - Chain 'D':
Compound: Histone H2B type 1-J
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H2BJ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqd_ - Chain 'E':
Compound: Histone H3.6
Species: Homo sapiens [TaxId:9606]
Gene: H3F3AP6
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: histone h4
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H4A
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqf_ - Chain 'G':
Compound: Histone H2A type 1-B/E
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H2AB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqg_ - Chain 'H':
Compound: Histone H2B type 1-J
Species: Homo sapiens [TaxId:9606]
Gene: HIST1H2BJ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5gxqh_ - Chain 'I':
Compound: DNA (146-mer)
Species: Homo sapiens [TaxId:9606]
- Chain 'J':
Compound: DNA (146-mer)
Species: Homo sapiens [TaxId:9606]
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5gxqB (B:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>5gxqB (B:)
niqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvtam
dvvyalkrqgrtlygfgg
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5gxqC (C:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>5gxqC (C:)
rakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaa
rdnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5gxqD (D:)
gshmpepaksapapkkgskkavtkaqkkdgkkrkrsrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtk
avtkytsak
Sequence, based on observed residues (ATOM records): (download)
>5gxqD (D:)
krsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5gxqF (F:)
gshmsgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrg
vlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>5gxqF (F:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
Sequence, based on SEQRES records: (download)
>5gxqG (G:)
gshmsgrgkqggkarakaktrssraglqfpvgrvhrllrkgnyservgagapvylaavle
yltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavll
pkkteshhkakgk
Sequence, based on observed residues (ATOM records): (download)
>5gxqG (G:)
ktrssraglqfpvgrvhrllrkgnyservgagapvylaavleyltaeilelagnaardnk
ktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk
- Chain 'H':
Sequence, based on SEQRES records: (download)
>5gxqH (H:)
gshmpepaksapapkkgskkavtkaqkkdgkkrkrsrkesysiyvykvlkqvhpdtgiss
kamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtk
avtkytsak
Sequence, based on observed residues (ATOM records): (download)
>5gxqH (H:)
rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkytsa
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.