PDB entry 5gvi

View 5gvi on RCSB PDB site
Description: Zebrafish USP30 in complex with Lys6-linked diubiquitin
Class: Hydrolase/SIGNALING PROTEIN
Keywords: Complex, mitophagy, Hydrolase-SIGNALING PROTEIN complex
Deposited on 2016-09-05, released 2017-09-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin carboxyl-terminal hydrolase 30
    Species: Danio rerio [TaxId:7955]
    Gene: usp30
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0R4ILB8 (3-End)
      • expression tag (0-2)
      • engineered mutation (15)
      • engineered mutation (69)
  • Chain 'B':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62983 (0-75)
      • engineered mutation (5)
    Domains in SCOPe 2.08: d5gvib_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Mus musculus [TaxId:10090]
    Gene: Rps27a, Uba80, Ubcep1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5gvic_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5gviB (B:)
mqifvrtltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5gviC (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlr