PDB entry 5gt2

View 5gt2 on RCSB PDB site
Description: Crystal Structure and Biochemical Features of dye-decolorizing peroxidase YfeX from Escherichia coli O157
Class: oxidoreductase
Keywords: YfeX, dye-decolorizing peroxidase, heme, OXIDOREDUCTASE
Deposited on 2016-08-18, released 2017-02-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-02-15, with a file datestamp of 2017-02-10.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable deferrochelatase/peroxidase YfeX
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yfeX, b2431, JW2424
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76536
      • engineered mutation (193)
    Domains in SCOPe 2.08: d5gt2a_
  • Chain 'B':
    Compound: Probable deferrochelatase/peroxidase YfeX
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yfeX, b2431, JW2424
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76536
      • engineered mutation (193)
    Domains in SCOPe 2.08: d5gt2b_
  • Chain 'C':
    Compound: Probable deferrochelatase/peroxidase YfeX
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yfeX, b2431, JW2424
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76536
      • engineered mutation (193)
    Domains in SCOPe 2.08: d5gt2c_
  • Chain 'D':
    Compound: Probable deferrochelatase/peroxidase YfeX
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: yfeX, b2431, JW2424
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76536
      • engineered mutation (193)
    Domains in SCOPe 2.08: d5gt2d_
  • Heterogens: HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5gt2A (A:)
msqvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafg
nntwralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdc
ievkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnl
kqlnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygta
sgthglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklmall
ehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt2A (A:)
qvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafgnn
twralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdcie
vkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlkq
lnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygtasg
thglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklma

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5gt2B (B:)
msqvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafg
nntwralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdc
ievkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnl
kqlnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygta
sgthglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklmall
ehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt2B (B:)
qvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafgnn
twralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdcie
vkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlkq
lnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygtasg
thglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklma

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5gt2C (C:)
msqvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafg
nntwralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdc
ievkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnl
kqlnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygta
sgthglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklmall
ehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt2C (C:)
qvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafgnn
twralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdcie
vkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlkq
lnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygtasg
thglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklma

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5gt2D (D:)
msqvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafg
nntwralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdc
ievkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnl
kqlnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygta
sgthglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklmall
ehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5gt2D (D:)
qvqsgilpehcraaiwieanvkgevdalraasktfadklatfeakfpdahlgavvafgnn
twralsggvgaeelkdfpgygkglapttqfdvlihilslrhdvnfsvaqaameafgdcie
vkeeihgfrwveerdlsgfvdgtenpageetrrevavikdgvdaggsyvfvqrwehnlkq
lnrmsvhdqemmigrtkeaneeidgderpetshltrvdlkedgkglkivrqslpygtasg
thglyfcaycarlhnieqqllsmfgdtdgkrdamlrftkpvtggyyfapsldklma