PDB entry 5gsm

View 5gsm on RCSB PDB site
Description: glycoside hydrolase b with product
Deposited on 2016-08-16, released 2017-02-01
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 1.27 Å
R-factor: N/A
AEROSPACI score: 0.68 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: exo-beta-d-glucosaminidase
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: Tk-Glm, TK1754
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: exo-beta-d-glucosaminidase
    Species: Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) [TaxId:69014]
    Gene: Tk-Glm, TK1754
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GCS, PEG, PPI, B3P, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >5gsmA (A:)
    mgkvefsgkryvidgepvtiaggtlqffrvpadawkdrllkmreaglntvdtyvawnwhe
    pekgsfdfkgethpqrnlvgfleladelgfyviirpgpyicgewrnggipdwlidehpei
    lakgpngplprdiyyppitylhptyleavgewynavfpvirkylytnggpiisvsiddep
    sywetifqpfltdyneiitkpgglwekwleqnytledlrrrykgdfkdyseikvptsfse
    plpklidwhhfklwmineyvrwiyermarefdvpisildpyllqvawrhfftymrehnlk
    ihvwtefwysfyrssdfkedklghiyyktgiyryhvrkagtpplsietqsslahtidpte
    aellysilpplgipninyylfvggenpegyeshngitwdvyspvgldgserphfgvikal
    setmtsaegladaelrpkvavglyepyealnlwgyegleestdlneyllgerglftllam
    sntpfdavdledvtldellsydqlwvysldfmsrevqdklvefvarggnlvilpmlpryd
    enlepysslkdflgveverekarrnprliqflsvsaegidrmlvrntvrgvrggepiafl
    gekpvgafvrkgggsavvlgfrlqyytshhdlhrkfvwklkelqgvredfevtnpdmivl
    pmegkgyaylavtnprghpikgrisyrglevpvlldgielkrrgtlylpfgvrkgdveva
    yatatlvmwegdvltfrnhlsghseialkgvesvkvsggkivdgsdgevlriviehpgey
    fevell
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >5gsmB (B:)
    mgkvefsgkryvidgepvtiaggtlqffrvpadawkdrllkmreaglntvdtyvawnwhe
    pekgsfdfkgethpqrnlvgfleladelgfyviirpgpyicgewrnggipdwlidehpei
    lakgpngplprdiyyppitylhptyleavgewynavfpvirkylytnggpiisvsiddep
    sywetifqpfltdyneiitkpgglwekwleqnytledlrrrykgdfkdyseikvptsfse
    plpklidwhhfklwmineyvrwiyermarefdvpisildpyllqvawrhfftymrehnlk
    ihvwtefwysfyrssdfkedklghiyyktgiyryhvrkagtpplsietqsslahtidpte
    aellysilpplgipninyylfvggenpegyeshngitwdvyspvgldgserphfgvikal
    setmtsaegladaelrpkvavglyepyealnlwgyegleestdlneyllgerglftllam
    sntpfdavdledvtldellsydqlwvysldfmsrevqdklvefvarggnlvilpmlpryd
    enlepysslkdflgveverekarrnprliqflsvsaegidrmlvrntvrgvrggepiafl
    gekpvgafvrkgggsavvlgfrlqyytshhdlhrkfvwklkelqgvredfevtnpdmivl
    pmegkgyaylavtnprghpikgrisyrglevpvlldgielkrrgtlylpfgvrkgdveva
    yatatlvmwegdvltfrnhlsghseialkgvesvkvsggkivdgsdgevlriviehpgey
    fevell