PDB entry 5gs1

View 5gs1 on RCSB PDB site
Description: Crystal structure of homo-specific diabody
Class: immune system
Keywords: diabody, antibody fragment, IMMUNE SYSTEM
Deposited on 2016-08-13, released 2016-10-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-10-12, with a file datestamp of 2016-10-07.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1 (0-End)
    Domains in SCOPe 2.07: d5gs1a_
  • Chain 'B':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1b_
  • Chain 'C':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1c1, d5gs1c2
  • Chain 'D':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1d1, d5gs1d2
  • Chain 'E':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1e1, d5gs1e2
  • Chain 'F':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1f1, d5gs1f2
  • Chain 'G':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1g1, d5gs1g2
  • Chain 'H':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1h1, d5gs1h2
  • Chain 'I':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1i1, d5gs1i2
  • Chain 'J':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1j1, d5gs1j2
  • Chain 'K':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1k1, d5gs1k2
  • Chain 'L':
    Compound: diabody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1l1, d5gs1l2
  • Chain 'M':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1 (0-End)
    Domains in SCOPe 2.07: d5gs1m_
  • Chain 'N':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1n_
  • Chain 'O':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1 (0-End)
    Domains in SCOPe 2.07: d5gs1o_
  • Chain 'P':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1p_
  • Chain 'Q':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1 (0-End)
    Domains in SCOPe 2.07: d5gs1q_
  • Chain 'R':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5GS1
    Domains in SCOPe 2.07: d5gs1r_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5gs1A (A:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1A (A:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5gs1B (B:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggs
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1B (B:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvss
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5gs1C (C:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1C (C:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5gs1D (D:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1D (D:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5gs1E (E:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1E (E:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5gs1F (F:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1F (F:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5gs1G (G:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1G (G:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvsdiv
    ltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvparf
    sgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >5gs1H (H:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1H (H:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssdi
    vltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvpar
    fsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >5gs1I (I:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1I (I:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >5gs1J (J:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1J (J:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >5gs1K (K:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1K (K:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >5gs1L (L:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssra
    tgvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1L (L:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssgg
    ggsdivltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssrat
    gvparfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >5gs1M (M:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1M (M:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'N':
    Sequence, based on SEQRES records: (download)
    >5gs1N (N:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggs
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1N (N:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvss
    

  • Chain 'O':
    Sequence, based on SEQRES records: (download)
    >5gs1O (O:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1O (O:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'P':
    Sequence, based on SEQRES records: (download)
    >5gs1P (P:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggs
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1P (P:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvss
    

  • Chain 'Q':
    Sequence, based on SEQRES records: (download)
    >5gs1Q (Q:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkveik
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1Q (Q:)
    divltqspatlslspgeratlscrasqsvssnylawyqqkpgqaprlliydsssratgvp
    arfsgsgsgtdftltisslepedfavyychqysdisptfgqgtkve
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >5gs1R (R:)
    evqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyy
    adsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvssg
    gggs
    

    Sequence, based on observed residues (ATOM records): (download)
    >5gs1R (R:)
    vqlvesggglvqpggslrlscaasgftfrnsamhwvrqapgkglewvssiwysgsntyya
    dsvkgrftisrdnskntlylqmnsltaedtavyycarfaggwgaydvwgqgtlvtvss