PDB entry 5gks
View 5gks on RCSB PDB site
Description: Crystal structure of SLE patient-derived anti-DNA antibody
Class: immune system
Keywords: antibody, lupus, Fab, IMMUNE SYSTEM
Deposited on
2016-07-05, released
2017-07-05
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-12-06, with a file datestamp of
2017-12-01.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: IgG2, Fab (heavy chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: lambda, Fab (light chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5gksb1, d5gksb2 - Chain 'C':
Compound: IgG2, Fab (heavy chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: lambda, Fab (light chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5gksd1, d5gksd2 - Heterogens: PO4, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5gksB (B:)
qsaltqprsvsgspgqsvtisctgtssdvggynyvswyqqhpgkapkvmiydvskrpsgv
pdrfsgsksgntasltisglqaedeadyyccsyagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>5gksB (B:)
saltqprsvsgspgqsvtisctgtssdvggynyvswyqqhpgkapkvmiydvskrpsgvp
drfsgsksgntasltisglqaedeadyyccsyagsytyvfgtgtkvtvlgqpkanptvtl
fppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvap
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5gksD (D:)
qsaltqprsvsgspgqsvtisctgtssdvggynyvswyqqhpgkapkvmiydvskrpsgv
pdrfsgsksgntasltisglqaedeadyyccsyagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>5gksD (D:)
saltqprsvsgspgqsvtisctgtssdvggynyvswyqqhpgkapkvmiydvskrpsgvp
drfsgsksgntasltisglqaedeadyyccsyagsytyvfgtgtkvtvlgqpkanptvtl
fppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqnkyaassyls
ltpeqwkshrsyscqvthegstvektvap