PDB entry 5gj6
View 5gj6 on RCSB PDB site
Description: Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens
Class: viral protein
Keywords: Rotavirus, P[19] VP8*, VIRAL PROTEIN
Deposited on
2016-06-28, released
2016-09-07
The last revision prior to the SCOPe 2.06 freeze date was dated
2016-09-07, with a file datestamp of
2016-09-02.
Experiment type: XRAY
Resolution: 2.39 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6a_ - Chain 'B':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6b_ - Chain 'C':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6c_ - Chain 'D':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6d_ - Chain 'E':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6e_ - Chain 'F':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6f_ - Chain 'G':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6g_ - Chain 'H':
Compound: Outer capsid protein VP4
Species: Human rotavirus A [TaxId:10941]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5gj6h_ - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6A (A:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6B (B:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6C (C:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6D (D:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6E (E:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6F (F:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6G (G:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>5gj6H (H:)
vldgpyqpvafkppndywilvnsnsngvvlegtnntdvwvaiisiepnvnsesrqyslfg
vnkqitvvntsnkwkfmemfrnnsnaefqhkrtltsstklvgilkhggrlwtyhgetpna
ttdysttsnlneisvttyaefyiiprsqeskcteyintgl