PDB entry 5fug

View 5fug on RCSB PDB site
Description: Crystal structure of a human YL1-H2A.Z-H2B complex
Class: DNA binding protein
Keywords: DNA binding protein, histone, chaperone, remodeler, h2a.z, yl1
Deposited on 2016-01-27, released 2016-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-04-20, with a file datestamp of 2016-04-15.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h2a.z
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fuga_
  • Chain 'B':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugb_
  • Chain 'C':
    Compound: Vacuolar protein sorting-associated protein 72 homolog
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: histone h2a.z
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugd_
  • Chain 'E':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fuge_
  • Chain 'F':
    Compound: Vacuolar protein sorting-associated protein 72 homolog
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a.z
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugg_
  • Chain 'H':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugh_
  • Chain 'I':
    Compound: Vacuolar protein sorting-associated protein 72 homolog
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: histone h2a.z
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugj_
  • Chain 'K':
    Compound: Histone H2B type 1-J
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5fugk_
  • Chain 'L':
    Compound: Vacuolar protein sorting-associated protein 72 homolog
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5fugA (A:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslikatiagggviphihksligkkgqqktv

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugA (A:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslikatiag

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5fugB (B:)
krsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugB (B:)
esysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsrei
qtavrlllpgelakhavsegtkavtkytsa

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5fugD (D:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslikatiagggviphihksligkkgqqktv

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugD (D:)
srsqraglqfpvgrihrhlksrrvgataavysaaileyltaevlelagnaskdlkvkrit
prhlqlairgdeeldslikatiag

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5fugE (E:)
krsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugE (E:)
rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkyts

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5fugG (G:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslikatiagggviphihksligkkgqqktv

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugG (G:)
srsqraglqfpvgrihrhlksrgrvgataavysaaileyltaevlelagnaskdlkvkri
tprhlqlairgdeeldslikat

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5fugH (H:)
krsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugH (H:)
esysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsrei
qtavrlllpgelakhavsegtkavtkyts

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5fugJ (J:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslikatiagggviphihksligkkgqqktv

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugJ (J:)
srsqraglqfpvgrihrhlksrttshgrvgataavysaaileyltaevlelagnaskdlk
vkritprhlqlairgdeeldslika

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5fugK (K:)
krsrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrsti
tsreiqtavrlllpgelakhavsegtkavtkytsak

    Sequence, based on observed residues (ATOM records): (download) 
    >5fugK (K:)
esysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsrei
qtavrlllpgelakhavsegtkavtkyts

  • Chain 'L':
    No sequence available.