PDB entry 5fkq

View 5fkq on RCSB PDB site
Description: Unraveling the first step of xyloglucan degradation by the soil saprophyte Cellvibrio japonicus through the functional and structural characterization of a potent GH74 endo-xyloglucanase
Class: hydrolase
Keywords: hydrolase, cellvibrio japonicus, xyloglucan saccharification, glycoside hydrolase, carbohydrate binding module, green fluorescent protein
Deposited on 2015-10-19, released 2015-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-05-18, with a file datestamp of 2016-05-13.
Experiment type: XRAY
Resolution: 1.71 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endo-1,4-beta-glucanase/xyloglucanase, putative, gly74a
    Species: Cellvibrio japonicus [TaxId:498211]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3PKK9 (1-732)
      • expression tag (0)
      • engineered mutation (37)
    Domains in SCOPe 2.08: d5fkqa1, d5fkqa2, d5fkqa3
  • Chain 'B':
    Compound: endo-1,4-beta-glucanase/xyloglucanase, putative, gly74a
    Species: Cellvibrio japonicus [TaxId:498211]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3PKK9 (Start-732)
      • engineered mutation (37)
    Domains in SCOPe 2.08: d5fkqb1, d5fkqb2
  • Heterogens: BR, EDO, K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5fkqA (A:)
    mapsenytwknvridgggfvpgiifnqkeadliyartaiggayrwnsatsswiplldwvg
    wdnwgwngvmslatdaadpnrvyaavgmytntwdpnngailrstdrgntwqatplpfkvg
    gnmpgrgmgerlaidpnrnsiiyygaeggnglwrstdygatwakvssftnggnyaqdpnd
    pndylnkiqgvvwvtfdpasgsagntsqviyvgvadtqnaiyrstdggttwsrlagqptg
    flphkgvydavngvlyiaysdtggpydgakgdvwkftassgtwtnispipssssdlyfgy
    sgltidrknpntlmvasqiawwpdavffrstnggaswtriwdwtsypsrsfrytmditev
    pwlnfgnsnpvapevspklgwmnesveidphnsnrlmygtgatiyatenltswdsggqil
    lkpmvkgleetavldvvsppvgapvysalgdiggfrhddltkvptsmyttpnfssttsid
    faelqpatmvrvgnldsgggigvttnaggswwqgqnppgvtsggnvalaadggaivwapg
    gstnvylsttfgstwtaisalpagavieadrvnpnkfyalangtfyvstnkgasfsatvt
    agipaaarkfkavygregdiwlaggsstttyglwrstnsgasftklasvqeadnvtfgka
    atgatypaiyiigkvdnvrgvfrstnegaswvrinddqrqygnfgeaisgdpriygrlyl
    gtngrgllygdsa
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5fkqB (B:)
    mapsenytwknvridgggfvpgiifnqkeadliyartaiggayrwnsatsswiplldwvg
    wdnwgwngvmslatdaadpnrvyaavgmytntwdpnngailrstdrgntwqatplpfkvg
    gnmpgrgmgerlaidpnrnsiiyygaeggnglwrstdygatwakvssftnggnyaqdpnd
    pndylnkiqgvvwvtfdpasgsagntsqviyvgvadtqnaiyrstdggttwsrlagqptg
    flphkgvydavngvlyiaysdtggpydgakgdvwkftassgtwtnispipssssdlyfgy
    sgltidrknpntlmvasqiawwpdavffrstnggaswtriwdwtsypsrsfrytmditev
    pwlnfgnsnpvapevspklgwmnesveidphnsnrlmygtgatiyatenltswdsggqil
    lkpmvkgleetavldvvsppvgapvysalgdiggfrhddltkvptsmyttpnfssttsid
    faelqpatmvrvgnldsgggigvttnaggswwqgqnppgvtsggnvalaadggaivwapg
    gstnvylsttfgstwtaisalpagavieadrvnpnkfyalangtfyvstnkgasfsatvt
    agipaaarkfkavygregdiwlaggsstttyglwrstnsgasftklasvqeadnvtfgka
    atgatypaiyiigkvdnvrgvfrstnegaswvrinddqrqygnfgeaisgdpriygrlyl
    gtngrgllygdsa
    

    Sequence, based on observed residues (ATOM records): (download)
    >5fkqB (B:)
    psenytwknvridgggfvpgiifnqkeadliyartaiggayrwnsatsswiplldwvgwd
    nwgwngvmslatdaadpnrvyaavgmytntwdpnngailrstdrgntwqatplpfkvggn
    mpgrgmgerlaidpnrnsiiyygaeggnglwrstdygatwakvssftnggnyaqdpndpn
    dylnkiqgvvwvtfdpasgsagntsqviyvgvadtqnaiyrstdggttwsrlagqptgfl
    phkgvydavngvlyiaysdtggpydgakgdvwkftassgtwtnispipssssdlyfgysg
    ltidrknpntlmvasqiawwpdavffrstnggaswtriwdwtsypsrsfrytmditevpw
    lnfgnsnpvapevspklgwmnesveidphnsnrlmygtgatiyatenltswdsggqillk
    pmvkgleetavldvvsppvgapvysalgdiggfrhddltkvptsmyttpnfssttsidfa
    elqpatmvrvgnldsgggigvttnaggswwqgqnppgvtsggnvalaadggaivwapggs
    tnvylsttfgstwtaisalpagavieadrvnpnkfyalangtfyvstnkgasfsatvtag
    ipaaarkfkavygregdiwlaggsstttyglwrstnsgasftklasvqeadnvtfgkaat
    gatypaiyiigkvdnvrgvfrstnegaswvrinddqrqygnfgeaisgdpriygrlylgt
    ngrgllygdsa