PDB entry 5fau

View 5fau on RCSB PDB site
Description: wild-type choline TMA lyase in complex with choline
Class: lyase
Keywords: radical, lyase, barrel
Deposited on 2015-12-12, released 2016-09-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-09-28, with a file datestamp of 2016-09-23.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Choline trimethylamine-lyase
    Species: Desulfovibrio alaskensis (strain G20) [TaxId:207559]
    Gene: Dde_3282
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5faua_
  • Chain 'B':
    Compound: Choline trimethylamine-lyase
    Species: Desulfovibrio alaskensis (strain G20) [TaxId:207559]
    Gene: Dde_3282
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5faub_
  • Chain 'C':
    Compound: Choline trimethylamine-lyase
    Species: Desulfovibrio alaskensis (strain G20) [TaxId:207559]
    Gene: Dde_3282
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5fauc_
  • Chain 'D':
    Compound: Choline trimethylamine-lyase
    Species: Desulfovibrio alaskensis (strain G20) [TaxId:207559]
    Gene: Dde_3282
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5faud_
  • Heterogens: CHT, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5fauA (A:)
mgsshhhhhhssglvprgshmpaeraslkkifegvsaevfsqpapvsavatgaesgipdg
ptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetaplviqd
helivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreevfpfwq
nksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmldiqrea
rekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrkaelqk
isevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyradidsgr
lteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatndltym
lmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmmlakgvs
iedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpdmgdls
qydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgrdvsag
gamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqiladcla
apkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllgasangr
rawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpegengl
itlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckdvqdei
isrtmlhgf

    Sequence, based on observed residues (ATOM records): (download) 
    >5fauA (A:)
gipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetap
lviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreev
fpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmld
iqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrk
aelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyrad
idsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatn
dltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmml
akgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpd
mgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgr
dvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqil
adclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllga
sangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpe
genglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckd
vqdeiisrtmlhgf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5fauB (B:)
mgsshhhhhhssglvprgshmpaeraslkkifegvsaevfsqpapvsavatgaesgipdg
ptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetaplviqd
helivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreevfpfwq
nksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmldiqrea
rekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrkaelqk
isevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyradidsgr
lteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatndltym
lmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmmlakgvs
iedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpdmgdls
qydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgrdvsag
gamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqiladcla
apkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllgasangr
rawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpegengl
itlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckdvqdei
isrtmlhgf

    Sequence, based on observed residues (ATOM records): (download) 
    >5fauB (B:)
sgipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfrycceta
plviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlree
vfpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgml
diqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprr
kaelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyra
didsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdat
ndltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmm
lakgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtp
dmgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesg
rdvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqi
ladclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllg
asangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtp
egenglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelck
dvqdeiisrtmlhgf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5fauC (C:)
mgsshhhhhhssglvprgshmpaeraslkkifegvsaevfsqpapvsavatgaesgipdg
ptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetaplviqd
helivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreevfpfwq
nksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmldiqrea
rekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrkaelqk
isevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyradidsgr
lteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatndltym
lmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmmlakgvs
iedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpdmgdls
qydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgrdvsag
gamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqiladcla
apkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllgasangr
rawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpegengl
itlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckdvqdei
isrtmlhgf

    Sequence, based on observed residues (ATOM records): (download) 
    >5fauC (C:)
sgipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfrycceta
plviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlree
vfpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgml
diqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprr
kaelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyra
didsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdat
ndltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmm
lakgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtp
dmgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesg
rdvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqi
ladclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllg
asangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtp
egenglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelck
dvqdeiisrtmlhgf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5fauD (D:)
mgsshhhhhhssglvprgshmpaeraslkkifegvsaevfsqpapvsavatgaesgipdg
ptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetaplviqd
helivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreevfpfwq
nksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmldiqrea
rekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrkaelqk
isevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyradidsgr
lteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatndltym
lmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmmlakgvs
iedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpdmgdls
qydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgrdvsag
gamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqiladcla
apkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllgasangr
rawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpegengl
itlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckdvqdei
isrtmlhgf

    Sequence, based on observed residues (ATOM records): (download) 
    >5fauD (D:)
sgipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfrycceta
plviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlree
vfpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgml
diqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprr
kaelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyra
didsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdat
ndltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmm
lakgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtp
dmgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesg
rdvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqi
ladclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllg
asangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtp
egenglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelck
dvqdeiisrtmlhgf