PDB entry 5f5i

View 5f5i on RCSB PDB site
Description: Crystal Structure of human JMJD2A complexed with KDOOA011340
Class: oxidoreductase
Keywords: DOUBLE-STRANDED BETA HELIX, DEMETHYLASE, OXYGENASE, OXIDOREDUCTASE, Structural Genomics, Structural Genomics Consortium, SGC
Deposited on 2015-12-04, released 2015-12-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-09-14, with a file datestamp of 2016-09-09.
Experiment type: XRAY
Resolution: 2.63 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 4a
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f5ia_
  • Chain 'B':
    Compound: lysine-specific demethylase 4a
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4A, JHDM3A, JMJD2, JMJD2A, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5f5ib_
  • Heterogens: NI, ZN, SO4, 5V1, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5f5iA (A:)
yfqsmasesetlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkpr
asyddiddlvipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefee
lerkywknltfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpyl
yfgmwktsfawhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqscea
flrhkmtlisplmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrw
ieygkqavlcscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaeflke
sel

    Sequence, based on observed residues (ATOM records): (download) 
    >5f5iA (A:)
esetlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyddid
dlvipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerkywk
nltfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgmwkt
sfawhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrhkmt
lisplmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieygkqa
vlcscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaae

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5f5iB (B:)
yfqsmasesetlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkpr
asyddiddlvipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefee
lerkywknltfnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpyl
yfgmwktsfawhtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqscea
flrhkmtlisplmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrw
ieygkqavlcscrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaeflke
sel

    Sequence, based on observed residues (ATOM records): (download) 
    >5f5iB (B:)
lnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyddiddlvi
papiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerkywknltf
nppiygadvngtlyekhvdewnigrlrtildlvekesvntpylyfgmwktsfawhtedmd
lysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrhkmtlisplmlkky
gipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieygkqavlcscrkdmv
kismdvfvrkfqperyklwkagkdntvidhtlptpeaaef