PDB entry 5ehd

View 5ehd on RCSB PDB site
Description: Crystal structure of human nucleophosmin-core in complex with cytochrome c
Class: oxidoreductase
Keywords: nucleolus, histone assembly, citochrome c, apoptosis, oxidoreductase
Deposited on 2015-10-28, released 2016-11-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-11-09, with a file datestamp of 2016-11-04.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehda_
  • Chain 'B':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdb_
  • Chain 'C':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdc_
  • Chain 'D':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdd_
  • Chain 'E':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehde_
  • Chain 'F':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdf_
  • Chain 'G':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdg_
  • Chain 'H':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdh_
  • Chain 'I':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdi_
  • Chain 'J':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ehdj_
  • Chain 'a':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: Nucleophosmin
    Species: Homo sapiens [TaxId:9606]
    Gene: NPM1, NPM
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ehdA (A:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdA (A:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ehdB (B:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdB (B:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlva

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ehdC (C:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdC (C:)
rpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspi
kvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ehdD (D:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdD (D:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlva

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ehdE (E:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdE (E:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ehdF (F:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdF (F:)
rpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspi
kvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5ehdG (G:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdG (G:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5ehdH (H:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdH (H:)
rpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspi
kvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5ehdI (I:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdI (I:)
rpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspi
kvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvav

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5ehdJ (J:)
msplrpqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnye
gspikvtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvaveedae

    Sequence, based on observed residues (ATOM records): (download) 
    >5ehdJ (J:)
pqnylfgcelkadkdyhfkvdndenehqlslrtvslgagakdelhiveaeamnyegspik
vtlatlkmsvqptvslggfeitppvvlrlkcgsgpvhisgqhlvave

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.

  • Chain 'g':
    No sequence available.

  • Chain 'h':
    No sequence available.

  • Chain 'i':
    No sequence available.

  • Chain 'j':
    No sequence available.