PDB entry 5efo

View 5efo on RCSB PDB site
Description: X-ray structure uridine phosphorylase from Vibrio cholerae in complex with cytidine and cytosine at 1.63A.
Class: transferase
Keywords: TRANSFERASE, Rossmann Fold
Deposited on 2015-10-24, released 2016-11-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-11-16, with a file datestamp of 2016-11-11.
Experiment type: XRAY
Resolution: 1.63 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efoa_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efob_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efoc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efod_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efoe_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Vibrio cholerae [TaxId:666]
    Gene: udp, udp_1, DN30_1909, EN12_05055, ERS013138_02408, ERS013140_00580, ERS013186_00327, ERS013199_00063, ERS013201_00032, ERS013202_00369, ERS013206_00377
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5efof_
  • Heterogens: NA, CYT, TRS, GOL, PEG, EDO, CTN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5efoA (A:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5efoA (A:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqpdhatlketearsikvvv
eaarkmlk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5efoB (B:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5efoC (C:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5efoC (C:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5efoD (D:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5efoD (D:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5efoE (E:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5efoE (E:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5efoF (F:)
mtktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqs
vvvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgasl
hfapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfq
gsmkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketears
ikvvveaarkmlk

    Sequence, based on observed residues (ATOM records): (download) 
    >5efoF (F:)
ktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsvv
vcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslhf
apmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqgs
mkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsik
vvveaarkmlk