PDB entry 5eek
View 5eek on RCSB PDB site
Description: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
Class: hydrolase/hydrolase inhibitor
Keywords: HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on
2015-10-23, released
2016-07-27
The last revision prior to the SCOPe 2.07 freeze date was dated
2016-09-07, with a file datestamp of
2016-09-02.
Experiment type: XRAY
Resolution: 1.59 Å
R-factor: N/A
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hdac6 protein
Species: Danio rerio [TaxId:7955]
Gene: HDAC6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5eeka_ - Heterogens: ZN, K, TSN, IOD, NH4, CL, GOL, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5eekA (A:)
snaggsspitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparla
teeelalchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaq
ailtgqvrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvh
hgngtqhifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmg
dpeymaafhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaa
grvliileggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfw
sslr
Sequence, based on observed residues (ATOM records): (download)
>5eekA (A:)
spitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeela
lchsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgq
vrnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtq
hifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeyma
afhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvlii
leggynltsisesmsmctsmllgdsppslltplktsatvsinnvlrahapfwsslr