PDB entry 5e9f

View 5e9f on RCSB PDB site
Description: Structural insights of isocitrate lyases from Magnaporthe oryzae
Class: lyase
Keywords: tim beta/alpha-barrel, lyase activity, lyase
Deposited on 2015-10-15, released 2016-04-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: isocitrate lyase
    Species: Magnaporthe oryzae 70-15 [TaxId:242507]
    Gene: ICL1, MGG_04895
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5e9fa_
  • Chain 'B':
    Compound: isocitrate lyase
    Species: Magnaporthe oryzae 70-15 [TaxId:242507]
    Gene: ICL1, MGG_04895
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5e9fb_
  • Chain 'C':
    Compound: isocitrate lyase
    Species: Magnaporthe oryzae 70-15 [TaxId:242507]
    Gene: ICL1, MGG_04895
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5e9fc_
  • Chain 'D':
    Compound: isocitrate lyase
    Species: Magnaporthe oryzae 70-15 [TaxId:242507]
    Gene: ICL1, MGG_04895
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5e9fd_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5e9fA (A:)
masknmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieyp
snaqskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdep
gpdladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadt
ghggltavmkltklfiekgaagihiedqapgtkkcghmagkvlvpisehinrlvairaqa
dimgvdllaiartdaeaatlittsidprdhafilgctnpslqpladlmntaeqsgktgdq
lqaiedewmakanlkrfddavvdvinssssirnpkdvaakylqaakgksnrearaiassl
gvpeiffdwdsprtregyfrikggcdcainraiayapyadaiwmesklpdyeqakefaeg
vhavypeqklaynlspsfnwktamprdeqetyirrlaglgycwqfitlaglhttalisdr
faraysevgmraygelvqepemelgvdvvkhqkwsgatyvdelqkmvtggvsstaamgkg
vtedqfhaaalehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5e9fA (A:)
knmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieypsna
qskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdepgpd
ladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadtghg
gltavmkltklfiekgaagihiedqapgtgkvlvpisehinrlvairaqadimgvdllai
artdaeaatlittsidprdhafilgctnpslqpladlmntaeiedewmakanlkrfddav
vdvinssssirnpkdvaakylqaakgksnrearaiasslgvpeiffdwdsprtregyfri
kggcdcainraiayapyadaiwmesklpdyeqakefaegvhavypeqklaynlspsfnwk
tamprdeqetyirrlaglgycwqfitlaglhttalisdrfaraysevgmraygelvqepe
melgvdvvkhqkwsgatyvdelqkmvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5e9fB (B:)
masknmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieyp
snaqskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdep
gpdladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadt
ghggltavmkltklfiekgaagihiedqapgtkkcghmagkvlvpisehinrlvairaqa
dimgvdllaiartdaeaatlittsidprdhafilgctnpslqpladlmntaeqsgktgdq
lqaiedewmakanlkrfddavvdvinssssirnpkdvaakylqaakgksnrearaiassl
gvpeiffdwdsprtregyfrikggcdcainraiayapyadaiwmesklpdyeqakefaeg
vhavypeqklaynlspsfnwktamprdeqetyirrlaglgycwqfitlaglhttalisdr
faraysevgmraygelvqepemelgvdvvkhqkwsgatyvdelqkmvtggvsstaamgkg
vtedqfhaaalehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5e9fB (B:)
knmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieypsna
qskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdepgpd
ladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadtghg
gltavmkltklfiekgaagihiedqapgtgkvlvpisehinrlvairaqadimgvdllai
artdaeaatlittsidprdhafilgctnpslqpladlmntaeqsgkiedewmakanlkrf
ddavvdvinvaakylqaakgksnrearaiasslgvpeiffdwdsprtregyfrikggcdc
ainraiayapyadaiwmesklpdyeqakefaegvhavypeqklaynlspsfnwktamprd
eqetyirrlaglgycwqfitlaglhttalisdrfaraysevgmraygelvqepemelgvd
vvkhqkwsgatyvdelqkmvt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5e9fC (C:)
masknmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieyp
snaqskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdep
gpdladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadt
ghggltavmkltklfiekgaagihiedqapgtkkcghmagkvlvpisehinrlvairaqa
dimgvdllaiartdaeaatlittsidprdhafilgctnpslqpladlmntaeqsgktgdq
lqaiedewmakanlkrfddavvdvinssssirnpkdvaakylqaakgksnrearaiassl
gvpeiffdwdsprtregyfrikggcdcainraiayapyadaiwmesklpdyeqakefaeg
vhavypeqklaynlspsfnwktamprdeqetyirrlaglgycwqfitlaglhttalisdr
faraysevgmraygelvqepemelgvdvvkhqkwsgatyvdelqkmvtggvsstaamgkg
vtedqfhaaalehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5e9fC (C:)
knmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieypsna
qskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdepgpd
ladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadtghg
gltavmkltklfiekgaagihiedqapgtgkvlvpisehinrlvairaqadimgvdllai
artdaeaatlittsidprdhafilgctnpslqpladlmntaeiedewmakanlkrfddav
vdvinaakylqaakgksnrearaiasslgvpeiffdwdsprtregyfrikggcdcainra
iayapyadaiwmesklpdyeqakefaegvhavypeqklaynlspsfnwktamprdeqety
irrlaglgycwqfitlaglhttalisdrfaraysevgmraygelvqepemelgvdvvkhq
kwsgatyvdelqkmvt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5e9fD (D:)
masknmvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieyp
snaqskklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdep
gpdladypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadt
ghggltavmkltklfiekgaagihiedqapgtkkcghmagkvlvpisehinrlvairaqa
dimgvdllaiartdaeaatlittsidprdhafilgctnpslqpladlmntaeqsgktgdq
lqaiedewmakanlkrfddavvdvinssssirnpkdvaakylqaakgksnrearaiassl
gvpeiffdwdsprtregyfrikggcdcainraiayapyadaiwmesklpdyeqakefaeg
vhavypeqklaynlspsfnwktamprdeqetyirrlaglgycwqfitlaglhttalisdr
faraysevgmraygelvqepemelgvdvvkhqkwsgatyvdelqkmvtggvsstaamgkg
vtedqfhaaalehhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5e9fD (D:)
mvnpavepsmeddlfarevaevkqwwsdprwrytkrpftaeqivskrgnlkieypsnaqs
kklwkilegrfqkrdasytygcleptmvtqmakyldtvyvsgwqssstasssdepgpdla
dypyttvpnkvshlfmaqlfhdrkqrherlsapksersklqnidylrpiiadadtghggl
tavmkltklfiekgaagihiedqapgtgkvlvpisehinrlvairaqadimgvdllaiar
tdaeaatlittsidprdhafilgctnpslqlkrfdgksnrearaiasslgffdwdsprtr
egyfrikggcdcainraiayapyadaiwmesklpdyeqakefaegvhavypeqklaynls
psfnwktamprdeqetyirrlaglgycwqfitlaglhttalisdrfaraysevgmrayge
lvqepemelgvdvvkhqkwsgatyvdelqkmvt