PDB entry 5dyf

View 5dyf on RCSB PDB site
Description: The crystal structure of Aminopeptidase N in complex with N-benzyl-1,2-diaminoethylphosphonic acid
Class: hydrolase/hydrolase inhibitor
Keywords: AminopeptidaseN, Inhibitor complex, N-benzyl-1, 2-diaminoethylphosphonic acid, hydrolase-hydrolase inhibitor complex, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG
Deposited on 2015-09-24, released 2015-11-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-11-25, with a file datestamp of 2015-11-20.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aminopeptidase N
    Species: Neisseria meningitidis serogroup B (strain MC58) [TaxId:122586]
    Gene: pepN, NMB1416
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5dyfa1, d5dyfa2, d5dyfa3, d5dyfa4
  • Heterogens: ZN, SO4, 5HR, GOL, IMD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dyfA (A:)
msktvhylkdyqtpayhilktdlhfdinepqtvvksrltvepqrvgeplvldgsakllsv
kingaaadyvlegetltiagvpserftveveteilpaenkslmglyasggnlftqcepeg
frkitfyidrpdvmskftttivadkkrypvllsngnkidggefsdgrhwvkwedpfskps
ylfalvagdlavtedyfttmsgrnvkiefytteadkpkvgfaveslknamkwdetrfgle
ydldifmvvavgdfnmgamenkglnifntkfvladsrtatdtdfegiesvvgheyfhnwt
gnrvtcrdwfqlslkegltvfrdqefsgdrasravrrienirllrqhqfpedagptahpv
rpasyeemnnfytmtvyekgaevvrmyhtllgeegfqkgmklyfqrhdgqavtcddfraa
madanginldqfalwysqagtpvleaegrlknnifeltvkqtvpptpdmtdkqpmmipvk
vgllnrngeavafdyqgkrateavlllteaeqtfllegvteavvpsllrgfsapvhlnyp
ysdddlllllahdsdaftrweaaqtlyrravaanlatlsdgvelpkhekllaavekvisd
dlldnafkalllgvpseaelwdgaenidplryhqarealldtlavhflpkwhelnrqaak
qenqsyeyspeaagwrtlrnvcrafvlradpahietvaekygemaqnmthewgilsavng
nesdtrnrllaqfadkfsddalvmdkyfalvgssrrsdtlqqvrtalqhpkfslenpnka
rsligsfsrnvphfhaedgsgyrfiadkvieidrfnpqvaarlvqafnlcnklephrknl
vkqalqriraqeglskdvgeivgkild

    Sequence, based on observed residues (ATOM records): (download) 
    >5dyfA (A:)
ktvhylkdyqtpayhilktdlhfdinepqtvvksrltvepqrvgeplvldgsakllsvki
ngaaadyvlegetltiagvpserftveveteilpaenkslmglyasggnlftqcepegfr
kitfyidrpdvmskftttivadkkrypvllsngnkidggefsdgrhwvkwedpfskpsyl
falvagdlavtedyfttmsgrnvkiefytteadkpkvgfaveslknamkwdetrfgleyd
ldifmvvavgdfnmgamenkglnifntkfvladsrtatdtdfegiesvvgheyfhnwtgn
rvtcrdwfqlslkegltvfrdqefsgdrasravrrienirllrqhqfpedagptahpvrp
asyeemnnfytmtvyekgaevvrmyhtllgeegfqkgmklyfqrhdgqavtcddfraama
danginldqfalwysqagtpvleaegrlknnifeltvkqtvpptpdmtdkqpmmipvkvg
llnrngeavafdyqgkrateavlllteaeqtfllegvteavvpsllrgfsapvhlnypys
dddlllllahdsdaftrweaaqtlyrravaanlatlsdgvelpkhekllaavekvisddl
ldnafkalllgvpseaelwdgaenidplryhqarealldtlavhflpkwhelnrqaakqe
nqsyeyspeaagwrtlrnvcrafvlradpahietvaekygemaqnmthewgilsavngne
sdtrnrllaqfadkfsddalvmdkyfalvgssrrsdtlqqvrtalqhpkfslenpnkars
ligsfsrnvphfhaedgsgyrfiadkvieidrfnpqvaarlvqafnlcnklephrknlvk
qalqriraqeglskdvgeivgkild