PDB entry 5dtk

View 5dtk on RCSB PDB site
Description: Fragments bound to the OXA-48 beta-lactamase: Compound 17
Class: hydrolase
Keywords: inhibitor, complex, fragment, lactamase, hydrolase
Deposited on 2015-09-18, released 2016-05-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-06-22, with a file datestamp of 2016-06-17.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: bla OXA-48, blaOXA-48, KPE71T_00045
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dtka_
  • Chain 'B':
    Compound: Beta-lactamase
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: bla OXA-48, blaOXA-48, KPE71T_00045
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dtkb_
  • Chain 'C':
    Compound: Beta-lactamase
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: bla OXA-48, blaOXA-48, KPE71T_00045
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dtkc_
  • Chain 'D':
    Compound: Beta-lactamase
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: bla OXA-48, blaOXA-48, KPE71T_00045
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dtkd_
  • Heterogens: CL, EDO, 5F3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dtkA (A:)
mrvlalsavflvasiigmpavakewqenkswnahftehksqgvvvlwnenkqqgftnnlk
ranqaflpastfkipnslialdlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvv
pvyqefarqigearmskmlhafdygnedisgnvdsfwldggirisateqisflrklyhnk
lhvsersqrivkqamlteangdyiiraktgystriepkigwwvgwvelddnvwffamnmd
mptsdglglrqaitkevlkqekiip

    Sequence, based on observed residues (ATOM records): (download) 
    >5dtkA (A:)
kewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnsliald
lgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlhaf
dygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteangd
yiiraktgystriepkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqek
iip

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5dtkB (B:)
mrvlalsavflvasiigmpavakewqenkswnahftehksqgvvvlwnenkqqgftnnlk
ranqaflpastfkipnslialdlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvv
pvyqefarqigearmskmlhafdygnedisgnvdsfwldggirisateqisflrklyhnk
lhvsersqrivkqamlteangdyiiraktgystriepkigwwvgwvelddnvwffamnmd
mptsdglglrqaitkevlkqekiip

    Sequence, based on observed residues (ATOM records): (download) 
    >5dtkB (B:)
kewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnsliald
lgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlhaf
dygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteangd
yiiraktgystriepkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqek
iip

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5dtkC (C:)
mrvlalsavflvasiigmpavakewqenkswnahftehksqgvvvlwnenkqqgftnnlk
ranqaflpastfkipnslialdlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvv
pvyqefarqigearmskmlhafdygnedisgnvdsfwldggirisateqisflrklyhnk
lhvsersqrivkqamlteangdyiiraktgystriepkigwwvgwvelddnvwffamnmd
mptsdglglrqaitkevlkqekiip

    Sequence, based on observed residues (ATOM records): (download) 
    >5dtkC (C:)
kewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnsliald
lgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlhaf
dygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteangd
yiiraktgystriepkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqek
iip

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5dtkD (D:)
mrvlalsavflvasiigmpavakewqenkswnahftehksqgvvvlwnenkqqgftnnlk
ranqaflpastfkipnslialdlgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvv
pvyqefarqigearmskmlhafdygnedisgnvdsfwldggirisateqisflrklyhnk
lhvsersqrivkqamlteangdyiiraktgystriepkigwwvgwvelddnvwffamnmd
mptsdglglrqaitkevlkqekiip

    Sequence, based on observed residues (ATOM records): (download) 
    >5dtkD (D:)
kewqenkswnahftehksqgvvvlwnenkqqgftnnlkranqaflpastfkipnsliald
lgvvkdehqvfkwdgqtrdiatwnrdhnlitamkysvvpvyqefarqigearmskmlhaf
dygnedisgnvdsfwldggirisateqisflrklyhnklhvsersqrivkqamlteangd
yiiraktgystriepkigwwvgwvelddnvwffamnmdmptsdglglrqaitkevlkqek
iip