PDB entry 5drp

View 5drp on RCSB PDB site
Description: Structure of the AaLpxC/LPC-023 Complex
Class: hydrolase/hydrolase inhibitor
Keywords: LpxC, Inhibitor, Lipid A, Gram-negative bacteria, hydrolase-hydrolase inhibitor complex
Deposited on 2015-09-16, released 2016-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: lpxC, envA, aq_1772
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67648
      • engineered mutation (180)
    Domains in SCOPe 2.08: d5drpa1, d5drpa2
  • Chain 'B':
    Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: lpxC, envA, aq_1772
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67648
      • engineered mutation (180)
    Domains in SCOPe 2.08: d5drpb1, d5drpb2
  • Heterogens: ZN, 5EP, CL, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5drpA (A:)
mglektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhst
dlgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnre
idyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartf
afdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgs
pvkgkfysfrgghslnvklvkelakkqkltrdlp

    Sequence, based on observed residues (ATOM records): (download) 
    >5drpA (A:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5drpB (B:)
mglektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhst
dlgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnre
idyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartf
afdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgs
pvkgkfysfrgghslnvklvkelakkqkltrdlp

    Sequence, based on observed residues (ATOM records): (download) 
    >5drpB (B:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqk