PDB entry 5dro
View 5dro on RCSB PDB site
Description: Structure of the Aquifex aeolicus LpxC/LPC-011 Complex
Class: hydrolase/hydrolase inhibitor
Keywords: LpxC, Inhibitor, Lipid A, Gram-negative bacteria, hydrolase-hydrolase inhibitor complex
Deposited on
2015-09-16, released
2016-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-11, with a file datestamp of
2019-12-06.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
Gene: lpxC, envA, aq_1772
Database cross-references and differences (RAF-indexed):
- Uniprot O67648
- engineered mutation (180)
Domains in SCOPe 2.08: d5droa1, d5droa2 - Chain 'B':
Compound: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
Gene: lpxC, envA, aq_1772
Database cross-references and differences (RAF-indexed):
- Uniprot O67648
- engineered mutation (180)
Domains in SCOPe 2.08: d5drob1, d5drob2 - Heterogens: ZN, ZH2, DMS, ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5droA (A:)
mglektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhst
dlgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnre
idyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartf
afdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgs
pvkgkfysfrgghslnvklvkelakkqkltrdlp
Sequence, based on observed residues (ATOM records): (download)
>5droA (A:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5droB (B:)
mglektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhst
dlgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnre
idyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartf
afdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgs
pvkgkfysfrgghslnvklvkelakkqkltrdlp
Sequence, based on observed residues (ATOM records): (download)
>5droB (B:)
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei
dyfvveepiivedegrlikaepsdtlevtyegefknflgrqkftfvegneeeivlartfa
fdweiehikkvglgkggslkntlvlgkdkvynpeglryenepvrhkvfdligdlyllgsp
vkgkfysfrgghslnvklvkelakkqk