PDB entry 5dk6

View 5dk6 on RCSB PDB site
Description: crystal structure of a 5'-methylthioadenosine/s-adenosylhomocysteine (mta/sah) nucleosidase (mtan) from colwellia psychrerythraea 34h (cps_4743, target psi-029300) in complex with adenine at 2.27 a resolution
Class: hydrolase
Keywords: HYDROLASE, MTA/SAH NUCLEOSIDASE FAMILY, MTAN, GAMMAPROTEOBACTERIA, Vibrio psychroerythus, ADENINE, PROTEIN-LIGAND COMPLEX, PROTEIN STRUCTURE INITIATIVE, PSI-Biology, Structural Genomics, New York Structural Genomics Research Consortium, NYSGRC
Deposited on 2015-09-03, released 2015-11-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-11-04, with a file datestamp of 2015-10-30.
Experiment type: XRAY
Resolution: 2.27 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
    Species: Colwellia psychrerythraea [TaxId:167879]
    Gene: mtnN, CPS_4743
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q47UY5 (22-End)
      • expression tag (17-21)
    Domains in SCOPe 2.07: d5dk6a1, d5dk6a2
  • Heterogens: GLY, ADE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dk6A (A:)
mhhhhhhssgvdlgtenlyfqsmkagiigamepevailkekltdakstehagytfhqgql
dgsdvvivqsgigkvaaalatailidrfqvdyvvntgsaggfdaslkvgdivvssevryh
dvdltafgyeigqlpanpaafmphddlvaaakkgieqlsqtagenikavtglittgdtfm
tkeedvakaranfptmaavemegaaiaqaclqlktpfvvirslsdiagkesphtfeeyle
taavnssqlvlnmlgqlkgkvlsaa

    Sequence, based on observed residues (ATOM records): (download) 
    >5dk6A (A:)
lyfqsmkagiigamepevailkekltdakstehagytfhqgqldgsdvvivqsgigkvaa
alatailidrfqvdyvvntgsaggfdaslkvgdivvssevryhdvdltafgyeigqlpan
paafmphddlvaaakkgieqlsqnikavtglittgdtfmtkeedvakaranfptmaavem
egaaiaqaclqlktpfvvirslsdiagkesphtfeeyletaavnssqlvlnmlgqlkgkv
ls