PDB entry 5dk4

View 5dk4 on RCSB PDB site
Description: Crystal structure analysis of Tryptophanyl-trna synthetase from Bacillus stearothermophilus in complex with indolmycin and Mg*ATP
Class: ligase/ligase inhibitor
Keywords: aaRS, inhibitor, LIGASE-LIGASE INHIBITOR complex
Deposited on 2015-09-02, released 2015-11-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tryptophan--tRNA ligase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: trpS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00953 (2-End)
      • expression tag (0-1)
      • conflict (64)
    Domains in SCOPe 2.08: d5dk4a1, d5dk4a2
  • Heterogens: ATP, MG, GOL, 5BX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dk4A (A:)
gmktifsgiqpsgvitignyigalrqfvelqheyncyfcivdqhaitvwqdphelrqnir
rlaalylavgidptqatlfiqsevpahaqaawmlqcivyigelermtqfkeksagkeavs
aglltypplmaadillyntdivpvgedqkqhieltrdlaerfnkrygelftipearipkv
garimslvdptkkmsksdpnpkayitllddaktiekkiksavtdsegtirydkeakpgis
nllniystlsgqsieelerqyegkgygvfkadlaqvvietlrpiqeryhhwmeseeldrv
ldegaekanrvasemvrkmeqamglgrrr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dk4A (A:)
gmktifsgiqpsgvitignyigalrqfvelqheyncyfcivdqhaitvwqdphelrqnir
rlaalylavgidptqatlfiqsevpahaqaawmlqcivyigelermtqfkeksagkeavs
aglltypplmaadillyntdivpvgedqkqhieltrdlaerfnkrygelftipearipkv
garimslvdptkkmsksdpnpkayitllddaktiekkiksavtdsegtirydkeakpgis
nllniystlsgqsieelerqyegkgygvfkadlaqvvietlrpiqeryhhwmeseeldrv
ldegaekanrvasemvrkmeqamglgrr