PDB entry 5dfl

View 5dfl on RCSB PDB site
Description: Crystal structure of Ube2K~Ubiquitin conjugate
Class: ligase/signaling protein
Keywords: LIGASE, SIGNALING PROTEIN, LIGASE-SIGNALING PROTEIN complex
Deposited on 2015-08-27, released 2015-12-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-12-09, with a file datestamp of 2015-12-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 K
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2K, HIP2, LIG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61086 (0-End)
      • engineered mutation (0)
      • engineered mutation (91)
      • engineered mutation (96)
      • conflict (169)
    Domains in SCOPe 2.08: d5dfla1, d5dfla2
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dflb_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5dflA (A:)
    aaniavqrikrefkevlkseetsknqikvdlvdenftelrgeiagppdtpyeggryqlei
    kipetypfnppkvrfitkiwhpnissvtgaikldilrdqwaaamtlrtvllslqallaaa
    epddpqdavvanqykqnpemfkqtarlwahvyagapvsspeytkkienlsamgfdrnavi
    valsskswdvetatelllsn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dflA (A:)
    aaniavqrikrefkevlkseetsknqikvdlvdenftelrgeiagppdtpyeggryqlei
    kipetypfnppkvrfitkiwhpnissvtgaikldilrdqwaaamtlrtvllslqallaaa
    epddpqdavvanqykqnpemfkqtarlwahvyagapvsspeytkkienlsamgfdrnavi
    valsskswdvetatellls
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5dflB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg