PDB entry 5deq

View 5deq on RCSB PDB site
Description: Crystal structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI in complex with L-arabinose
Class: transcription regulator
Keywords: Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, TRANSCRIPTION REGULATOR
Deposited on 2015-08-25, released 2015-10-21
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-10-21, with a file datestamp of 2015-10-16.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5deqa1, d5deqa2
  • Chain 'B':
    Compound: transcriptional regulator AraR
    Species: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) [TaxId:226186]
    Gene: BT_0354
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5deqb1, d5deqb2
  • Heterogens: ARA, SO4, FMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5deqA (A:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

    Sequence, based on observed residues (ATOM records): (download) 
    >5deqA (A:)
mknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvddaa
krvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnaywvn
inelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepmdkr
nfrkrvaemdfiektdkidkrgaalykfngkayr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5deqB (B:)
snamknyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvd
daakrvlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnay
wvninelpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepm
dkrnfrkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl

    Sequence, based on observed residues (ATOM records): (download) 
    >5deqB (B:)
nyyssnptfylgidciifgfnegeisllllkrnfepamgewslmggfvqkdesvddaakr
vlaeltglenvymeqvgafgaidrdpgervvsiayyalinineydrelvqkhnaywvnin
elpalifdhpemvdkaremmkqkasvepigfnllpklftlsqlqslyeaiygepmdkrnf
rkrvaemdfiektdkidklgskrgaalykfngkayrkdpkfkl