PDB entry 5dec
View 5dec on RCSB PDB site
Description: Crystal structure of the small alarmone synthetase 1 from Bacillus subtilis
Class: transferase
Keywords: (p)ppGpp, stringent response, alarmone, allosteric regulator, transferase
Deposited on
2015-08-25, released
2015-10-28
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-10-28, with a file datestamp of
2015-10-23.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: GTP pyrophosphokinase YjbM
Species: Bacillus subtilis (strain 168) [TaxId:224308]
Gene: yjbM, BSU11600
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5deca_ - Chain 'B':
Compound: GTP pyrophosphokinase YjbM
Species: Bacillus subtilis (strain 168) [TaxId:224308]
Gene: yjbM, BSU11600
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5decb_ - Chain 'C':
Compound: GTP pyrophosphokinase YjbM
Species: Bacillus subtilis (strain 168) [TaxId:224308]
Gene: yjbM, BSU11600
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5decc_ - Chain 'D':
Compound: GTP pyrophosphokinase YjbM
Species: Bacillus subtilis (strain 168) [TaxId:224308]
Gene: yjbM, BSU11600
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5decd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5decA (A:)
mghhhhhhdddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasi
lekarrksiplheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiaehke
sgyrsyhlvvlyplqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrl
qraseaasrldeemseirgevqeaqaafsrkkkgseqq
Sequence, based on observed residues (ATOM records): (download)
>5decA (A:)
ddkwerflvpyrqaveelkvklkgirtlyeddhspiefvtgrvkpvasilekarrksipl
heietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiagyrsyhlvvlyplqt
vsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasrldeemse
irgevqea
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5decB (B:)
mghhhhhhdddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasi
lekarrksiplheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiaehke
sgyrsyhlvvlyplqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrl
qraseaasrldeemseirgevqeaqaafsrkkkgseqq
Sequence, based on observed residues (ATOM records): (download)
>5decB (B:)
ddkwerflvpyrqaveelkvklkgirtlyedhspiefvtgrvkpvasilekarrksiplh
eietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiahkesgyrsyhlvvlyp
lqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasrldee
mseirgevqea
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5decC (C:)
mghhhhhhdddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasi
lekarrksiplheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiaehke
sgyrsyhlvvlyplqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrl
qraseaasrldeemseirgevqeaqaafsrkkkgseqq
Sequence, based on observed residues (ATOM records): (download)
>5decC (C:)
ddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasilekarrksi
plheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrsyhlvvlyplqtvsgek
hvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasrldeemseirgev
qea
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5decD (D:)
mghhhhhhdddkwerflvpyrqaveelkvklkgirtlyeyeddhspiefvtgrvkpvasi
lekarrksiplheietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiaehke
sgyrsyhlvvlyplqtvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrl
qraseaasrldeemseirgevqeaqaafsrkkkgseqq
Sequence, based on observed residues (ATOM records): (download)
>5decD (D:)
ddkwerflvpyrqaveelkvklkgirtlyeddhspiefvtgrvkpvasilekarrksipl
heietmqdiaglrimcqfvddiqivkemlfarkdftvvdqrdyiasgyrsyhlvvlyplq
tvsgekhvlveiqirtlamnfwatiehslnykysgnipekvklrlqraseaasrldeems
eirgevqea