PDB entry 5ddz

View 5ddz on RCSB PDB site
Description: Crystal structure of the RTA-c10-P2 complex
Class: hydrolase/peptide
Keywords: Ricin, P2, Complex, HYDROLASE-PEPTIDE complex
Deposited on 2015-08-25, released 2016-09-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-12-28, with a file datestamp of 2016-12-22.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ddza_
  • Chain 'B':
    Compound: 60S acidic ribosomal protein P2
    Species: Homo sapiens [TaxId:9606]
    Gene: RPLP2, D11S2243E, RPP2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ddzA (A:)
mghhhhhhifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglp
inqrfilvelsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvq
nrytfafggnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiici
qmiseaarfqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiql
qrrngskfsvydvsilipiialmvyrcapppssqf

    Sequence, based on observed residues (ATOM records): (download) 
    >5ddzA (A:)
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrcappp

  • Chain 'B':
    No sequence available.