PDB entry 5ddr
View 5ddr on RCSB PDB site
Description: L-glutamine riboswitch bound with L-glutamine soaked with Cs+
Class: RNA binding protein/RNA
Keywords: riboswitch, L-glutamine, bound-form, RNA, RNA BINDING PROTEIN-RNA complex
Deposited on
2015-08-25, released
2015-12-23
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-09-20, with a file datestamp of
2017-09-15.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: N/A
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: L-glutamine riboswitch RNA (61-MER)
Species: Synechococcus elongatus [TaxId:32046]
- Chain 'B':
Compound: L-glutamine riboswitch RNA (61-MER)
Species: Synechococcus elongatus [TaxId:32046]
- Chain 'C':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA
Database cross-references and differences (RAF-indexed):
- Uniprot P09012
- engineered mutation (29)
- engineered mutation (34)
Domains in SCOPe 2.07: d5ddrc_ - Chain 'D':
Compound: U1 small nuclear ribonucleoprotein A
Species: Homo sapiens [TaxId:9606]
Gene: SNRPA
Database cross-references and differences (RAF-indexed):
- Uniprot P09012 (Start-96)
- engineered mutation (29)
- engineered mutation (34)
Domains in SCOPe 2.07: d5ddrd_ - Heterogens: GLN, K, MG, CS, NA, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5ddrC (C:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk
Sequence, based on observed residues (ATOM records): (download)
>5ddrC (C:)
vpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkev
ssatnalrsmqgfpfydkpmriqyaktdsdiiak
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5ddrD (D:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk
Sequence, based on observed residues (ATOM records): (download)
>5ddrD (D:)
etrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevss
atnalrsmqgfpfydkpmriqyaktdsdiiakmk