PDB entry 5ddq

View 5ddq on RCSB PDB site
Description: L-glutamine riboswitch bound with L-glutamine soaked with Mn2+
Class: RNA binding protein/RNA
Keywords: riboswitch, L-glutamine, bound-form, RNA, RNA BINDING PROTEIN-RNA complex
Deposited on 2015-08-25, released 2015-12-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-04-05, with a file datestamp of 2017-03-31.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-glutamine riboswitch RNA (61-MER)
    Species: Synechococcus elongatus [TaxId:32046]
  • Chain 'B':
    Compound: L-glutamine riboswitch RNA (61-MER)
    Species: Synechococcus elongatus [TaxId:32046]
  • Chain 'C':
    Compound: U1 small nuclear ribonucleoprotein A
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09012
      • engineered mutation (29)
      • engineered mutation (34)
    Domains in SCOPe 2.07: d5ddqc_
  • Chain 'D':
    Compound: U1 small nuclear ribonucleoprotein A
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09012
      • engineered mutation (29)
      • engineered mutation (34)
    Domains in SCOPe 2.07: d5ddqd_
  • Heterogens: GLN, MN, MG, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ddqC (C:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ddqC (C:)
petrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevs
satnalrsmqgfpfydkpmriqyaktdsdiiakm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ddqD (D:)
avpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifke
vssatnalrsmqgfpfydkpmriqyaktdsdiiakmk

    Sequence, based on observed residues (ATOM records): (download) 
    >5ddqD (D:)
vpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkev
ssatnalrsmqgfpfydkpmriqyaktdsdiia